refactor(pipe): Split pipeline into core and specialized modules - #16
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This refactor separates the shared pipeline engine from specific segmenter implementations. Shared logic for step initialization, state management, and execution is moved to `pipe_core.py`, while Cellpose and BABY-specific logic are isolated in their own modules. - Extract shared engine and helper functions to `pipe_core.py` - Create `pipe_baby.py` and `pipe_builder_baby.py` for BABY - pipelines Simplify `pipe.py` and `pipe_builder.py` to focus on - Cellpose Support pipeline-specific post-state hooks for custom - metadata extraction
Clean up the module by removing unnecessary imports from pipe_core and deleting the __all__ list to simplify the public interface.
afermg
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Apr 30, 2026
afermg
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It took me years to accept but the baby pipeline is quite different from the current standard.
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This refactor separates the shared pipeline engine from specific segmenter implementations. Shared logic for step initialization, state management, and execution is moved to
pipe_core.py, while Cellpose and BABY-specific logic are isolated in their own modules.pipe_core.pypipe_baby.pyandpipe_builder_baby.pyfor BABYpipe.pyandpipe_builder.pyto focus on