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Single-cell I/O: compress intermediates, add tagged and deduplicated BAM outputs - #421

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andrewprzh wants to merge 18 commits into
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sc_outputs
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Single-cell I/O: compress intermediates, add tagged and deduplicated BAM outputs#421
andrewprzh wants to merge 18 commits into
masterfrom
sc_outputs

note that the gzip timestamp is left alone

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