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[Question] --minimapoption setting when using multiple input data types

Status: Open.

#67 In aaranyue/quarTeT;

· callumjethomas opened on May 5, 2026

plant option not working in teloexplorer

Status: Open.

#65 In aaranyue/quarTeT;

· rsandean opened on Apr 8, 2026

Merqury out .completeness.stats were empty

Status: Open.

#64 In aaranyue/quarTeT;

· JcWukkkk opened on Jan 23, 2026

Inquiry regarding missing bjm.best.candidate and .png plots in CentroMiner output

Status: Open.

#63 In aaranyue/quarTeT;

· YakunWang opened on Dec 25, 2025

There was a problem with the drawing during telomere identification

Status: Open.

#60 In aaranyue/quarTeT;

· YuanQing-KIB opened on Nov 3, 2025

Can not pass arguments to "--minimapoption" in Gapfiller

Status: Open.

#59 In aaranyue/quarTeT;

· ruellia-zhu opened on Oct 29, 2025

NO blast

Status: Open.

#54 In aaranyue/quarTeT;

· Allinonelearning opened on Jun 26, 2025

potential fix for jpg output with conda dependency install

Status: Open.

#49 In aaranyue/quarTeT;

· lldean18 opened on Jan 23, 2025

python3 quartet.py CentroMiner -i ref_chr.fa --TE ref_chr.fa.mod.EDTA.intact.gff3 -t 16

Status: Open.

#47 In aaranyue/quarTeT;

· yxx200929 opened on Dec 23, 2024

[suggestion] Change minimap2 to Unimap and use asm5 for same species but asm20 for related species

Status: Open.

#43 In aaranyue/quarTeT;

· Isoris opened on Nov 24, 2024

Subject: Using QuarTeT GapFiller with Unplaced Scaffolds and Flanks from a related species.

Status: Open.

#42 In aaranyue/quarTeT;

· Isoris opened on Oct 19, 2024

[ERROR] failed to open file 'quarTeT.flank_map_ILhap1hap2.fa.paf'

Status: Open.

#40 In aaranyue/quarTeT;

· lijphd168866 opened on Sep 27, 2024