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  • University of Nebraska-Lincoln

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Xinpeng021001/README.md

Xinpeng Zhang

Typing SVG

University of Nebraska–Lincoln · bcb-unl

GitHub Lab Profile views

About

I am a Ph.D. student in bioinformatics at the University of Nebraska–Lincoln, working on CAZyme annotation and the dbCAN tool ecosystem. My current interests also include protein language models and LLM-assisted bioinformatics workflows.

  • Building and maintaining run_dbcan and related microbiome pipelines under bcb-unl
  • Exploring structure- and language-model methods beyond classical HMMER / DIAMOND search
  • Looking to collaborate on CAZyme annotation, metagenomics, and research software

Featured tools

Public repositories I contribute to under the bcb-unl organization.

bcb-unl/run_dbcan   bcb-unl/dbcan-nf

GitHub activity

GitHub stats Top languages

Stack

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Nextflow Bioinformatics

Links

If you are working on CAZyme annotation, metagenomics, or LLM-assisted bioinformatics tooling, feel free to open an issue or reach out via GitHub.

Popular repositories Loading

  1. biocode biocode Public

    Forked from jorvis/biocode

    Bioinformatics code libraries and scripts

    Python

  2. final_course_project_metagenomics final_course_project_metagenomics Public

    The final course project of Dr.Yanbin Yin's course in 2023 fall. The aim is to use algea microbiome sequencing data to do the whole analysis from raw reads to the gene annotation.

    1

  3. run_dbcan run_dbcan Public

    Forked from linnabrown/run_dbcan

    Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

    Python

  4. daily_project_code daily_project_code Public

    daily code collection, including projects and others

    Python

  5. dbCAN_fungi dbCAN_fungi Public

    Codes for dbCAN_fungi

    Python

  6. run_dbcan_nf run_dbcan_nf Public

    Workflow for CAZymes annotation with run_dbcan

    Nextflow