Ismailelshimy patch 1 - #26
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it is important to arrange the samples in the branch cell proportions matrix such that they have the same order as the order of samples in the design data frame before running a t-test.
It is important to set the default num.time point in the getPopulationFit() function to the maximum of the pseudotime vector, otherwise running plotGene function downstream would result in subscript out of bounds error.
Add permuiter argument to the cellPropTest() function to allow users to control the number of permutations.
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