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Streamlined pipeline for cal-val #967
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f872053
Initializing the updated IFT pipeline
danielmwatkins 08d8dc6
fix docstring for tiled adaptive binarization
danielmwatkins e8472d7
add functions for segmentation
8a0f1ec
Working segmentation pipeline
danielmwatkins 9c9786f
fix typos
danielmwatkins fadf4a4
warn with get ice peaks error
danielmwatkins 0d7a2a1
add watershed split function
3771a6b
Improve split functions, fix bugs
4247cde
Pair of potential pipelines for IFT
2e1cce8
temp add test scripts
62a781d
remove whitespace
danielmwatkins c61af4b
Merge remote-tracking branch 'origin' into feat_new_pipeline
danielmwatkins 55c6698
update outputs and include new CLAHE
danielmwatkins 4a6afc9
formatting
danielmwatkins f39fd9c
minor changes to temp test file
danielmwatkins 05836bf
minor updates and tweaks
danielmwatkins 10b9212
Merge remote-tracking branch 'origin' into feat_new_pipeline
danielmwatkins e37fa29
Split SegB functions
danielmwatkins 2fd701d
Splitting segmentation F
danielmwatkins b7eb303
Add tests for FSPipeline
danielmwatkins 2e2c273
update outputs and inputs
danielmwatkins c9ada95
test scripts to delete later
danielmwatkins bec9766
visualize simple cleanup
danielmwatkins 9c5e10f
development work
danielmwatkins c7ab38c
Testing dropping part of seg B
danielmwatkins 706bff1
merge updates from main
danielmwatkins 687a18a
merging changes
danielmwatkins 5784a72
Merge remote-tracking branch 'origin' into feat_new_pipeline
e29b353
Add version of nonlinear diffusion which accepts tiles
5ce1a09
update FSPipeline
24c3962
update FSPipeline
0507de4
fix typo
98ba745
minor updates
danielmwatkins 86ad4f1
continued updates
bf75b0a
wip
4da5f05
Initial commit
danielmwatkins d65912d
Add new pipeline to IFT based on k-means and distance transform
danielmwatkins d28e6f1
Merge remote-tracking branch 'origin/main' into feat_new_pipeline
hollandjg 2d21d13
add validation data region case list
hollandjg 5d80eb3
Change clip parameter to 5
danielmwatkins 5baba4c
Merge pull request #969 from WilhelmusLab/merge-region-case-list
danielmwatkins 670299c
updated nbins to 128 to avoid index error
danielmwatkins 52994d6
update to main
df9f8d2
updating variable names
0a0a237
Remove old version of update
51f633a
use tiling for nonlinear diff, remove old version
c193758
Remove dev scripts
0978ba9
Update docs
329bd97
Update tests to use original 64-bin method
79af5ff
dist morph split edit
8565ce2
expose threshold function inputs in def
d81101f
Extend inputs for Track function
8d63854
setting up for baffin bay run
7cdef9c
Add imports for expanded tracker
1ebb0c2
adding post-seg filter
d4c697e
cleanup filter
danielmwatkins 43e0299
updating pipeline
danielmwatkins 4538e2b
Merge remote-tracking branch 'origin' into feat_new_pipeline
danielmwatkins facf4b1
local updates
danielmwatkins 5987014
updated workflow
44648d0
reformat filter_functions
hollandjg 74f5d2c
Merge branch 'main' into feat_new_pipeline
hollandjg eeba74f
minor edits at home
36d9aa7
Merge updates from main
danielmwatkins d4bc414
fix merge error
hollandjg f11439e
move validation region case list into configs subdirectory
hollandjg ca09d5f
Merge updates from main
danielmwatkins 5d6edf7
Merge bug fix
danielmwatkins 30fbc23
Cleanup docstring
danielmwatkins 50c77f9
add remove large floes
e539df9
Fixed typo, also include temp script for running and exporting algori…
danielmwatkins 62993b6
local updates
3184d6e
Merge branch 'feat_new_pipeline' of https://github.com/WilhelmusLab/I…
ab67450
update to match main
danielmwatkins 82c1c43
Merge branch 'feat_new_cloudmask' into feat_new_pipeline
danielmwatkins a5def67
Merge branch 'feat_new_pipeline' of https://github.com/WilhelmusLab/I…
7b5fdfa
Merge remote-tracking branch 'origin' into feat_new_pipeline
dc56a95
Update MODIS134 method to more generic version
danielmwatkins 9f588cb
Update default to match cluster algo inputs
danielmwatkins 5f88981
updates
danielmwatkins 20b9bfa
Merge branch 'feat_new_pipeline' of https://github.com/WilhelmusLab/I…
1b70d1e
temp. downgrade of tests
danielmwatkins 98ed33b
update function signatures for midpoints algo
danielmwatkins c4ebcc0
update presets and modify speckle removal
danielmwatkins f7d0a21
typo
danielmwatkins 0aab312
cleaning up pipeline code
danielmwatkins b6e7abd
update temp file
danielmwatkins 911f5fc
Merge remote-tracking branch 'origin' into feat_new_pipeline
danielmwatkins 32eecd9
Workflow updates
danielmwatkins ace553d
Remove bright floe mask from output
aa13e3a
merge changes
0a02863
Incorporating the adaptive binarization
0cdf3c7
Added filters, which reduce recall but improve precision
aea7a5f
Add floe merge methodology
8e5fcda
import euclidean distance
bfb0a9c
update filtering
daaa5b3
Remove test file
danielmwatkins 59591ae
Update src/Segmentation/ice-detection-algorithms.jl
danielmwatkins eddcbb3
Update src/Segmentation/ice-detection-algorithms.jl
danielmwatkins 75da30b
Update src/Segmentation/ice-detection-algorithms.jl
danielmwatkins fd7a4dd
remove unused variables
danielmwatkins 7c16ec5
apply CP suggestion to Preprocess
danielmwatkins 5cfb3db
Merge branch 'feat_new_pipeline' of https://github.com/WilhelmusLab/I…
danielmwatkins 0adc703
Move preprocess parameters to const
danielmwatkins a6b90a2
Moving parameters to constants
danielmwatkins bb865f8
relax test
danielmwatkins 08eea7b
remove commented line
danielmwatkins 35801f6
simplify test code
danielmwatkins 57ea507
organizing inputs
danielmwatkins a70d03e
Removing unused lines
danielmwatkins 61f8b69
correcting docstring
danielmwatkins 0fbb41a
Refactor default filter setup in FilterFunction
cpaniaguam b3f9242
Update test/test-find-ice-labels.jl
danielmwatkins e73fa43
Update workflow/configs/validation-cases/validation-region-case.csv
danielmwatkins 5c22721
Update test/test-segmentation-FSPipeline.jl
danielmwatkins 8e6369c
Update src/Pipeline/FSPipeline.jl
danielmwatkins fca401e
Add step to return empty DF if no relevant sets
danielmwatkins 38eb4bb
update formatting
danielmwatkins 89258ba
Merge branch 'feat_new_pipeline' of https://github.com/WilhelmusLab/I…
danielmwatkins bfeb5f1
Merge pull request #1026 from WilhelmusLab/refactor-default-tracker-f…
cpaniaguam 1475120
revert test find ice labels, @ notation caused errors
danielmwatkins 1e4f910
Merge branch 'feat_new_pipeline' of https://github.com/WilhelmusLab/I…
danielmwatkins 35ba7bc
Add mask for adaptive result
danielmwatkins c496c66
Minor update to the adaptive threshold method
danielmwatkins 59f70d3
Apply formatter
cpaniaguam 07ee4cf
Re-add segment mean images
ba90752
Re-add segment mean images
c6e0b65
Re-add segment mean images
595c634
correct error with filter format
833fa35
Add FSPipeline into test list
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