Port JATSParser plugin to OJS 3.5

.gitignore

@@ -1,2 +1,28 @@
+# SVN
+.svn/
+
+# Documentazione interna
+DOCUMENTAZIONE_OJS35.md
+
+
+# File di debug
+app/app-debug.js
+
+# OS
+Thumbs.db
+.DS_Store
+*:Zone.Identifier
+*.Identifier
+
+# IDE
 .idea/
-node_modules/
+.vscode/
+
+# Testing
+.phpunit.result.cache
+
+# Compiled locale
+locale/**/*.mo
+
+# Submodules
+ JATSParser/vendor/

FullTextArticleHandler.php

@@ -0,0 +1,93 @@
+<?php
+/**
+ * @file plugins/generic/jatsParser/FullTextArticleHandler.php
+ *
+ * Copyright (c) 2017-2018 Vitalii Bezsheiko
+ * Distributed under the GNU GPL v3.
+ *
+ * @class FullTextArticleHandler
+ * @ingroup plugins_generic_jatsParser
+ */
+
+namespace APP\plugins\generic\jatsParser;
+
+use APP\facades\Repo;
+use APP\pages\article\ArticleHandler;
+use PKP\plugins\PluginRegistry;
+use Symfony\Component\HttpKernel\Exception\NotFoundHttpException;
+
+class FullTextArticleHandler extends ArticleHandler
+{
+    private string $pluginName;
+
+    /** @var JatsParserPlugin */
+    private $_plugin;
+
+    public function __construct(string $pluginName)
+    {
+        $this->pluginName = $pluginName;
+        $this->_plugin = PluginRegistry::getPlugin('generic', $pluginName);
+        parent::__construct();
+    }
+
+    /**
+     * @param array $args
+     * @param \APP\core\Request $request
+     * @brief download supplementary files for article's full-text
+     */
+    public function downloadFullTextAssoc(array $args, $request): void
+    {
+        $fileId = $args[2];
+        if (empty($fileId) || !$this->article || !$this->publication) {
+            throw new NotFoundHttpException();
+        }
+
+        if (!$this->userCanViewGalley($request, $this->article->getId())) {
+            header('HTTP/1.0 403 Forbidden');
+            echo '403 Forbidden<br>';
+            exit;
+        }
+
+        $fullTextFileIds = $this->publication->getData('jatsParser::fullTextFileId');
+        if (empty($fullTextFileIds)) {
+            throw new NotFoundHttpException();
+        }
+
+        // Find if the file is an image dependent from the XML file, from which full-text was generated.
+        $dependentFilesIterator = Repo::submissionFile()
+            ->getCollector()
+            ->filterByAssoc(\APP\core\Application::ASSOC_TYPE_SUBMISSION_FILE, array_values($fullTextFileIds))
+            ->filterBySubmissionIds([$this->article->getId()])
+            ->filterByFileStages([\PKP\submissionFile\SubmissionFile::SUBMISSION_FILE_DEPENDENT])
+            ->includeDependentFiles()
+            ->getMany();
+
+        if ($dependentFilesIterator->isEmpty()) {
+            throw new NotFoundHttpException();
+        }
+
+        $submissionFile = null;
+        foreach ($dependentFilesIterator as $dependentFile) {
+            if ($fileId == $dependentFile->getData('fileId')) {
+                $submissionFile = $dependentFile;
+                break;
+            }
+        }
+
+        if (!$submissionFile) {
+            throw new NotFoundHttpException();
+        }
+
+        if (!in_array($submissionFile->getData('mimetype'), JatsParserPlugin::getSupportedSupplFileTypes())) {
+            throw new NotFoundHttpException();
+        }
+
+        // Download file if exists
+        if (!app()->get('file')->fs->has($submissionFile->getData('path'))) {
+            throw new NotFoundHttpException();
+        }
+
+        $filename = app()->get('file')->formatFilename($submissionFile->getData('path'), $submissionFile->getLocalizedData('name'));
+        app()->get('file')->download($submissionFile->getData('fileId'), $filename);
+    }
+}