XMLgenerator_V1 is a Python script designed to generate structured XML files for BEAST v1.10.4. The tool provides flexibility for creating custom XML programmatically.
Run the script:
python XMLgenerator_v1.py [-o OUTPUT] [-t TEMPLATE] [-f FASTA] [-g GFF] [-p PRIORS] [-m MCMC] [-l LOG]
Optional arguments:
-h, --help [show this help message and exit.]
-o OUTPUT, --output OUTPUT [The output XML file.]
-t TEMPLATE, --template TEMPLATE [The XML template file.]
-f FASTA, --fasta FASTA [The aligned fasta file.]
-g GFF, --gff GFF [The gff annotation file.]
-p PRIORS, --priors PRIORS [The priors table in csv format.]
-m MCMC, --mcmc MCMC [The MCMC chain length.]
-l LOG, --log LOG [Write the log file.]