Skip to content

Navigation Menu

Appearance settings

- AI CODE CREATION
  GitHub CopilotWrite better code with AI
  GitHub Copilot appDirect agents from issue to merge
  MCP Registry^NewIntegrate external tools
- DEVELOPER WORKFLOWS
  ActionsAutomate any workflow
  CodespacesInstant dev environments
  IssuesPlan and track work
  Code ReviewManage code changes
- APPLICATION SECURITY
  GitHub Advanced SecurityFind and fix vulnerabilities
  Code securitySecure your code as you build
  Secret protectionStop leaks before they start
- EXPLORE
  Why GitHub
  Documentation
  Blog
  Changelog
  Marketplace
View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Uh oh!

There was an error while loading. Please reload this page.

UMCUGenetics / DxNextflowRNA Public

Notifications You must be signed in to change notification settings
Fork 0
Star 1

Code
Issues
Pull requests 2
Actions
Projects
Security and quality
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights

Feature/variant calling#60

Merged

Jorisvansteenbrugge merged 20 commits into

developUMCUGenetics/DxNextflowRNA:developfrom

feature/variant_callingUMCUGenetics/DxNextflowRNA:feature/variant_callingCopy head branch name to clipboard

Jun 9, 2026

Conversation Commits20 (20)Checks Files changed

Merged

Feature/variant calling#60
Jorisvansteenbrugge merged 20 commits into
developfrom
feature/variant_calling

Commits

Commits on May 20, 2026

variant calling workflow
Jorisvansteenbrugge
committed
add unit test
Jorisvansteenbrugge
committed
fix params typo
Jorisvansteenbrugge
committed
fix params typo
Jorisvansteenbrugge
committed

Commits on May 22, 2026

variant filtration step
Jorisvansteenbrugge
committed
add missing run flag param
Jorisvansteenbrugge
committed

Commits on May 26, 2026

Merge branch 'develop' into feature/variant_calling
Jorisvansteenbrugge
authored
fix config syntax errors
Jorisvansteenbrugge
committed
merge gatk scatters after haplotypecaller
Jorisvansteenbrugge
committed
mqc outdir conf fix
Jorisvansteenbrugge
committed
update step count
Jorisvansteenbrugge
committed

Commits on Jun 2, 2026

add caching for repeated jobs
Jorisvansteenbrugge
committed
fix styling
Jorisvansteenbrugge
committed
remove random underscore
Jorisvansteenbrugge
committed
improve readability
Jorisvansteenbrugge
committed

Commits on Jun 3, 2026

prepare genomes subflow and bedtops/gtf2bed
Jorisvansteenbrugge
committed
default dbSNP version to 156
Jorisvansteenbrugge
committed
update snapshot after gtf2bed change
Jorisvansteenbrugge
committed
fixed typo in variable name
Jorisvansteenbrugge
committed
generate bedops/gtf2bed patch file
Jorisvansteenbrugge
committed

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.