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G3 733 fix null symbol 500 on geneset values cross species - #109
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francastell merged 2 commits intoMar 12, 2026
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Genes with no matching ortholog were returned with ode_ref_id=None,
causing Pydantic serialization failures (500) on /values and silent
null symbol corruption on /{id} and /file endpoints.
…12.3 Unit tests cover filtering of null ode_ref_id entries in both get_geneset_gene_values and get_geneset_w_gene_id_type, including mixed and all-null scenarios. Also fixes pre-existing test that relied on broken cross-species homolog mock behavior.
Test Coverage Report |
desais-jax
approved these changes
Mar 12, 2026
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