Name		Name	Last commit message	Last commit date
Figure2		Figure2
Figure3		Figure3
Figure4		Figure4
Figure5		Figure5
Figure6/plot		Figure6/plot
Figure7		Figure7
README.md		README.md

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CellPilot manuscript figure scripts

This folder contains the scripts used to reproduce the figures in the CellPilot manuscript.

Folder layout

Figure2: benchmark analysis and plotting scripts.
Figure3: scATAC-seq analysis with CellPilot, Signac, and ArchR.
Figure4: WNN analysis and comparison plots.
Figure5: spatial transcriptomics and region segmentation analyses.
Figure6: multi-sample integration and feature visualization scripts.
Figure7: kidney annotation analysis and agent annotation plots.

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This is a repo for reproducing the figures in our CellPilot paper

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