General improvements - #11

Merged

jonasfreimuth merged 26 commits into

masterfrom

freimujo/refactor-script-dispatch

Sep 2, 2026

Commits on Sep 1, 2026

refactor(scripts): Make global consts UPPER_CASE
jonasfreimuth
committed
472f477
refactor(scripts): Rename reference variables
jonasfreimuth
committed
ad2d8c6
chore(reference): Fix most pylance issues
jonasfreimuth
committed
9efa0d4
refactor(scripts): Improve dir constant system
jonasfreimuth
committed
cc1a52c
refactor(scripts): Move dir constants to module
jonasfreimuth
committed
966ed8d
chore(scripts): Remove unused imports
jonasfreimuth
committed
ff12a5b
feat!(scripts): Remove version & date attributes
jonasfreimuth
committed
2e7674a
refactor(scripts): Move functionality to own funs
jonasfreimuth
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fcd8c1f
chore(merge): Remove commented out code
jonasfreimuth
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40e9d45
refactor(scripts): Load param ranges in config
jonasfreimuth
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cb5627c
refactor(convert): Properly pass args
jonasfreimuth
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342396d
refactor(customize): Properly pass args
jonasfreimuth
committed
94682d1
refactor(extract): Properly pass args
jonasfreimuth
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5c47f23
refactor(genotype): Properly pass args
jonasfreimuth
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8d18efa
refactor(merge): Properly pass args
jonasfreimuth
committed
4efe22c
refactor(quant): Properly pass args
jonasfreimuth
committed
669aa16
refactor(partial): Properly pass args
jonasfreimuth
committed
4b0da29
refactor(reference): Properly parse args
jonasfreimuth
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0c0069c
refactor(scripts): Give everything a main fun
jonasfreimuth
committed
9715dcc
chore: Remove unused setup.py
jonasfreimuth
committed
7f90b6a
chore(scripts): Fix command lists
jonasfreimuth
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3da7316
feat(arcas_utilities): Check if tool is available
jonasfreimuth
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08e3d10
refactor(scripts): Move parser making to sep funs
jonasfreimuth
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67d48ed
tests(conftest): Directly run extraction
jonasfreimuth
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b731b35
feat: Add central dispatch script
jonasfreimuth
committed
e69ab4e
fix(scripts): Wire entrypoint to central dispatch

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General improvements - #11

General improvements#11
jonasfreimuth merged 26 commits into
masterfrom
freimujo/refactor-script-dispatch

Commits on Sep 1, 2026

refactor(scripts): Make global consts UPPER_CASE

refactor(scripts): Rename reference variables

chore(reference): Fix most pylance issues

refactor(scripts): Improve dir constant system

refactor(scripts): Move dir constants to module

chore(scripts): Remove unused imports

feat!(scripts): Remove version & date attributes

refactor(scripts): Move functionality to own funs

chore(merge): Remove commented out code

refactor(scripts): Load param ranges in config

refactor(convert): Properly pass args

refactor(customize): Properly pass args

refactor(extract): Properly pass args

refactor(genotype): Properly pass args

refactor(merge): Properly pass args

refactor(quant): Properly pass args

refactor(partial): Properly pass args

refactor(reference): Properly parse args

refactor(scripts): Give everything a main fun

chore: Remove unused setup.py

chore(scripts): Fix command lists

feat(arcas_utilities): Check if tool is available

refactor(scripts): Move parser making to sep funs

tests(conftest): Directly run extraction

feat: Add central dispatch script

fix(scripts): Wire entrypoint to central dispatch