Hello.
First congratulations for such a significant contribution to BRCA research. I have a question about your PAM50 calling on your pseudo bulk tumors.
My question is regarding this function pam50.symbol2symbol.v2.
1: Have you applied this subtype calling function on only "One " pseudo tumor or the mixtures of only your pseudo tumors?
2: Or Have you merged it with your training data first and then run this caller . I mean (your data + TCGA data) ? and then run this pam50 calling function pam50.symbol2symbol.v2 on this combined data?
Hello.
First congratulations for such a significant contribution to BRCA research. I have a question about your PAM50 calling on your pseudo bulk tumors.
My question is regarding this function pam50.symbol2symbol.v2.
1: Have you applied this subtype calling function on only "One " pseudo tumor or the mixtures of only your pseudo tumors?
2: Or Have you merged it with your training data first and then run this caller . I mean (your data + TCGA data) ? and then run this pam50 calling function pam50.symbol2symbol.v2 on this combined data?