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Cleanup root documentation surface - #4

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synqing merged 1 commit into
feat/mcp-rag-bootstrapfrom
cleanup/root-files
Jul 12, 2026
Merged

Cleanup root documentation surface#4
synqing merged 1 commit into
feat/mcp-rag-bootstrapfrom
cleanup/root-files

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@synqing

@synqing synqing commented Jul 11, 2026

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Summary

  • add _scratch/ to .gitignore as a tracked root-cleanup guard
  • delete root-level agent/session completion reports with no visitor value
  • move retained root reference docs into docs/internal/legacy-root/ and README inputs into docs/internal/legacy-root/readme-inputs/

Validation

  • git diff --cached --check before commit
  • root loose .md/.txt files reduced to README.md
  • protected dirty checkout was read-only checked after commit

Notes

  • This PR does not apply IP-ruling removals, internal-agent-dir removals, README/licence/settings changes, or history rewrites.

Summary by CodeRabbit

  • Documentation
    • Added comprehensive guidance for PCB design automation, board population, routing, validation, manufacturing exports, and setup workflows.
    • Added quick-start guides, API references, troubleshooting instructions, readiness checklists, and decision-making references.
    • Removed outdated analysis, completion, validation, deployment, and implementation reports to streamline documentation.
  • Chores
    • Updated repository ignore rules to exclude scratch workspace files.

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ℹ️ Recent review info
⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 56a5ae06-ae61-4ae1-9070-997c5b0ecf34

📥 Commits

Reviewing files that changed from the base of the PR and between 5b8d535 and 0285e4d.

📒 Files selected for processing (85)
  • .gitignore
  • AGENT_IMPLEMENTATION_COMPLETE.md
  • ANALYSIS_COMPLETE.txt
  • ANALYSIS_DELIVERABLES.txt
  • ANALYSIS_SUMMARY_KICAD_9_API.txt
  • ANALYSIS_SUMMARY_VISUAL.txt
  • ASSESSMENT_REVIEW_COMPLETE.txt
  • CAPTAIN_ASSESSMENT_VALIDATION.md
  • COMPLETION_REPORT.md
  • CRITICAL_FINDING_SILENT_FAILURES.md
  • DELIVERABLES_INDEX.md
  • DELIVERABLES_MANIFEST.md
  • DEPLOYMENT_READY.txt
  • DEPLOYMENT_VALIDATION_REPORT.md
  • ELITE_PCB_DESIGNER_COMPLETE.md
  • EXECUTION_READY.md
  • FAB_PACK_IMPLEMENTATION_COMPLETE.md
  • FORENSIC_ANALYSIS_PERSISTENCE_FAILURE.md
  • IMPLEMENTATION_COMPLETE.md
  • IMPLEMENTATION_VALIDATION_REPORT.md
  • IPC_LIBRARY_DELIVERABLES.md
  • K1_FAB_PACK_VALIDATION_REPORT.md
  • OPTION_B_FIX_VALIDATION_WITH_REAL_PCBNEW.md
  • PERSISTENCE_FAILURE_ANALYSIS_INDEX.md
  • PERSISTENCE_FAILURE_EXECUTIVE_SUMMARY.txt
  • PHASE1_COMPLETE.md
  • PHASE1_IMPLEMENTATION_SUMMARY.md
  • PHASE2_DELIVERABLES.md
  • PHASE2_IMPLEMENTATION_SUMMARY.md
  • PHASE3_IMPLEMENTATION_SUMMARY.md
  • PHASE4_FILES_MANIFEST.md
  • PHASE4_IMPLEMENTATION_SUMMARY.md
  • PHASE5_IMPLEMENTATION_SUMMARY.md
  • REAL_DATA_VALIDATION_SUMMARY.md
  • SILENT_FAILURES_FIXED_VERIFICATION.md
  • TRIGGER_DEV_ANALYSIS_SUMMARY.txt
  • TRIGGER_DEV_PHASE1_IMPLEMENTATION.md
  • TRIGGER_DEV_RECOMMENDATION.txt
  • VALIDATION_COMPLETE_HONEST_ASSESSMENT.md
  • docs/internal/legacy-root/BOARD_POPULATION_GUIDE.md
  • docs/internal/legacy-root/DECISION_MATRIX_PATH_FORWARD.md
  • docs/internal/legacy-root/DEPLOYMENT_GUIDE.md
  • docs/internal/legacy-root/DSN_FORMAT_REFERENCE.md
  • docs/internal/legacy-root/ELITE_PCB_DESIGNER_AGENT_SPEC.md
  • docs/internal/legacy-root/ELITE_PCB_DESIGNER_QUICK_START.md
  • docs/internal/legacy-root/ELITE_PCB_DESIGNER_USER_GUIDE.md
  • docs/internal/legacy-root/FREEROUTING_API_REFERENCE.md
  • docs/internal/legacy-root/FREEROUTING_INTEGRATION_SPEC.md
  • docs/internal/legacy-root/FREEROUTING_QUICK_START.md
  • docs/internal/legacy-root/FREEROUTING_RESEARCH_INDEX.md
  • docs/internal/legacy-root/FREEROUTING_RESEARCH_SUMMARY.md
  • docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md
  • docs/internal/legacy-root/IPC_LIBRARY_README.md
  • docs/internal/legacy-root/IPC_STANDARDS_SPECIFICATION.md
  • docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md
  • docs/internal/legacy-root/K1_HARDWARE_AUDIT_REPORT.md
  • docs/internal/legacy-root/K1_UNIFIED_SYSTEM_PRO.md
  • docs/internal/legacy-root/KICAD_9_API_QUICK_REFERENCE.md
  • docs/internal/legacy-root/KICAD_9_PYTHON_API_COMPREHENSIVE_ANALYSIS.md
  • docs/internal/legacy-root/KICAD_API_ANALYSIS_INDEX.md
  • docs/internal/legacy-root/MCP_SETUP.md
  • docs/internal/legacy-root/PCBNEW_API_AUDIT_REPORT.md
  • docs/internal/legacy-root/PHASE1_USAGE_GUIDE.md
  • docs/internal/legacy-root/PHASE2_FILE_STRUCTURE.txt
  • docs/internal/legacy-root/PHASE3_AUTOMATED_ROUTING_README.md
  • docs/internal/legacy-root/PHASE4_ARCHITECTURE.md
  • docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md
  • docs/internal/legacy-root/PHASE4_QUICK_START.md
  • docs/internal/legacy-root/PHASE5_VERIFICATION_CHECKLIST.md
  • docs/internal/legacy-root/PIPELINE_READINESS_CHECKLIST.md
  • docs/internal/legacy-root/QUICK_REFERENCE.txt
  • docs/internal/legacy-root/ROOT_CAUSE_CODE_EVIDENCE.txt
  • docs/internal/legacy-root/ROOT_CAUSE_TECHNICAL_REFERENCE.md
  • docs/internal/legacy-root/RUN_UNIFIED_SYSTEM.md
  • docs/internal/legacy-root/SETUP_CREDENTIALS.md
  • docs/internal/legacy-root/SYSTEM_INDEX.md
  • docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md
  • docs/internal/legacy-root/USAGE_GUIDE.md
  • docs/internal/legacy-root/readme-inputs/QUICKSTART.md
  • docs/internal/legacy-root/readme-inputs/README_COMPONENT_PLACEMENT.md
  • docs/internal/legacy-root/readme-inputs/README_ELITE_PCB_DESIGNER.md
  • docs/internal/legacy-root/readme-inputs/README_KICAD_ANALYSIS.md
  • docs/internal/legacy-root/readme-inputs/README_PHASE1.md
  • docs/internal/legacy-root/readme-inputs/README_TRIGGER_DEV.md
  • docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md
💤 Files with no reviewable changes (38)
  • TRIGGER_DEV_RECOMMENDATION.txt
  • DELIVERABLES_INDEX.md
  • ANALYSIS_COMPLETE.txt
  • PERSISTENCE_FAILURE_ANALYSIS_INDEX.md
  • ASSESSMENT_REVIEW_COMPLETE.txt
  • PHASE4_IMPLEMENTATION_SUMMARY.md
  • PHASE1_COMPLETE.md
  • CAPTAIN_ASSESSMENT_VALIDATION.md
  • ANALYSIS_SUMMARY_KICAD_9_API.txt
  • DEPLOYMENT_READY.txt
  • ANALYSIS_DELIVERABLES.txt
  • EXECUTION_READY.md
  • DELIVERABLES_MANIFEST.md
  • VALIDATION_COMPLETE_HONEST_ASSESSMENT.md
  • PHASE4_FILES_MANIFEST.md
  • K1_FAB_PACK_VALIDATION_REPORT.md
  • PERSISTENCE_FAILURE_EXECUTIVE_SUMMARY.txt
  • DEPLOYMENT_VALIDATION_REPORT.md
  • TRIGGER_DEV_PHASE1_IMPLEMENTATION.md
  • TRIGGER_DEV_ANALYSIS_SUMMARY.txt
  • PHASE5_IMPLEMENTATION_SUMMARY.md
  • IMPLEMENTATION_COMPLETE.md
  • FAB_PACK_IMPLEMENTATION_COMPLETE.md
  • OPTION_B_FIX_VALIDATION_WITH_REAL_PCBNEW.md
  • ANALYSIS_SUMMARY_VISUAL.txt
  • SILENT_FAILURES_FIXED_VERIFICATION.md
  • PHASE3_IMPLEMENTATION_SUMMARY.md
  • COMPLETION_REPORT.md
  • PHASE2_DELIVERABLES.md
  • IMPLEMENTATION_VALIDATION_REPORT.md
  • PHASE1_IMPLEMENTATION_SUMMARY.md
  • FORENSIC_ANALYSIS_PERSISTENCE_FAILURE.md
  • AGENT_IMPLEMENTATION_COMPLETE.md
  • PHASE2_IMPLEMENTATION_SUMMARY.md
  • CRITICAL_FINDING_SILENT_FAILURES.md
  • REAL_DATA_VALIDATION_SUMMARY.md
  • ELITE_PCB_DESIGNER_COMPLETE.md
  • IPC_LIBRARY_DELIVERABLES.md

📝 Walkthrough

Walkthrough

Changes

The change adds a large internal documentation set covering KiCad automation, FreeRouting, IPC standards, validation phases, MCP setup, unified workflows, audits, and troubleshooting. It also adds _scratch/ to .gitignore.

PCB automation workflows — Guides document board population, contract/plugin/orchestrator execution, routing, validation, and fabrication exports.

Technical references — New references cover DSN/SES, FreeRouting APIs, KiCad Python APIs, IPC standards, and known board-save failure behavior.

Operational documentation — Readmes, quick starts, readiness checklists, audit reports, credential setup, and MCP deployment instructions were added.

Estimated code review effort: 4 (Complex) | ~60 minutes

🚥 Pre-merge checks | ✅ 5
✅ Passed checks (5 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title clearly matches the PR’s main change: cleaning up and relocating root-level documentation.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch cleanup/root-files

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Actionable comments posted: 1

Note

Due to the large number of review comments, Critical severity comments were prioritized as inline comments.

🟡 Minor comments (35)
docs/internal/legacy-root/ROOT_CAUSE_CODE_EVIDENCE.txt-7-8 (1)

7-8: 🔒 Security & Privacy | 🟡 Minor | ⚡ Quick win

Replace the absolute workstation path with a repository-relative path.

This tracked document exposes the local username and filesystem layout (/Users/spectrasynq/...) and makes the evidence non-reproducible on other machines. Use a repo-relative path such as elite_pcb_designer.py.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/ROOT_CAUSE_CODE_EVIDENCE.txt` around lines 7 - 8,
Replace the absolute workstation path in ROOT_CAUSE_CODE_EVIDENCE.txt with the
repository-relative filename elite_pcb_designer.py, preserving the referenced
line range.
docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md-249-267 (1)

249-267: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Update the file-structure example after relocating this document.

The actual file is now under docs/internal/legacy-root/, but the tree still lists K1_FAB_PACK_QUICKSTART.md at the repository root. Correct the path so the cleanup/migration documentation does not send readers to a nonexistent location.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md` around lines 249 - 267,
Update the “Complete File Structure” tree in K1_FAB_PACK_QUICKSTART.md so its
final document entry points to
docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md instead of the repository
root, leaving the rest of the structure unchanged.
docs/internal/legacy-root/PHASE2_FILE_STRUCTURE.txt-90-90 (1)

90-90: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Call this a test pass rate, not test coverage.

33/38 describes an 86.8% pass rate; code coverage requires statement/branch coverage data. Rename this metric or provide the actual coverage result to avoid overstating validation.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE2_FILE_STRUCTURE.txt` at line 90, Rename the
“Test Coverage” metric in PHASE2_FILE_STRUCTURE.txt to “Test Pass Rate” while
preserving the existing 33/38 result, or replace it with actual statement/branch
coverage data if available; do not label test pass counts as code coverage.
docs/internal/legacy-root/PIPELINE_READINESS_CHECKLIST.md-16-31 (1)

16-31: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Correct the stackup thickness calculation.

The values shown sum to 4 × 0.035 mm + 3 × 0.17 mm = 0.65 mm, not 0.6 mm. Align the stated total with the actual board file or update the layer values.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PIPELINE_READINESS_CHECKLIST.md` around lines 16 -
31, Correct the “Total thickness” statement in the stackup documentation to
match the displayed layer values, or update those values to match the actual
board file. Ensure the copper and dielectric measurements and resulting total
are internally consistent.
docs/internal/legacy-root/KICAD_9_API_QUICK_REFERENCE.md-307-317 (1)

307-317: 🩺 Stability & Availability | 🟡 Minor | ⚡ Quick win

Guard GetNet() before calling GetNetname(). Tracks and vias without an assigned net can return None, so both examples can fail on valid boards.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/KICAD_9_API_QUICK_REFERENCE.md` around lines 307 -
317, Update both track and via examples to guard the result of GetNet() before
calling GetNetname(). Use a safe fallback for unassigned nets while preserving
the existing output for tracks and vias with assigned nets.
docs/internal/legacy-root/IPC_LIBRARY_README.md-269-281 (1)

269-281: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Correct the file-count summary.

The overview table lists seven files, but the summary says “6 files.” Update the count so the deliverable inventory is internally consistent.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/IPC_LIBRARY_README.md` around lines 269 - 281,
Correct the total file count in the Files Overview summary from six to seven so
it matches the seven listed entries, while leaving the rest of the inventory
unchanged.
docs/internal/legacy-root/IPC_STANDARDS_SPECIFICATION.md-203-208 (1)

203-208: 📐 Maintainability & Code Quality | 🟡 Minor | ⚡ Quick win

Fix the malformed table row.

The Note row has only two cells in a four-column table, which triggers MD056 and renders inconsistently.

-| Note | Voltage-dependent; higher voltage requires larger spacing |
+| Note | Voltage-dependent; higher voltage requires larger spacing | — | — |
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/IPC_STANDARDS_SPECIFICATION.md` around lines 203 -
208, Fix the malformed Note row in the “Minimum Trace Width and Spacing” table
by providing four cells matching the table’s column structure, preserving the
voltage-dependent spacing note in the appropriate cell and leaving unused cells
empty.

Source: Linters/SAST tools

docs/internal/legacy-root/IPC_LIBRARY_README.md-392-395 (1)

392-395: 📐 Maintainability & Code Quality | 🟡 Minor | ⚡ Quick win

Fix links broken by the documentation move.

From docs/internal/legacy-root/, these links resolve under the documentation directory rather than the repository root, so they no longer reach hardware/....

Proposed fix
-- [K1 Lightwave Specifications](./hardware/k1-lightwave/README.md)
+- [K1 Lightwave Specifications](../../../hardware/k1-lightwave/README.md)
-- [WS2812B LED Datasheet](./hardware/datasheets/)
+- [WS2812B LED Datasheet](../../../hardware/datasheets/)
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/IPC_LIBRARY_README.md` around lines 392 - 395,
Update the K1 Documentation links in the visible documentation section to
resolve from the repository root rather than docs/internal/legacy-root: adjust
the relative K1 Lightwave Specifications and WS2812B LED Datasheet links to
traverse to the root-level hardware directory, while leaving the external
ESP32-S3 Datasheet URL unchanged.
docs/internal/legacy-root/PHASE4_QUICK_START.md-97-112 (1)

97-112: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Define board_path before constructing ThermalValidator.

The example references board_path without assigning it, so it raises NameError when copied verbatim.

Proposed fix
 from design_validation import ThermalValidator, ThermalParameters
+from pathlib import Path
+
+board_path = Path("path/to/board.kicad_pcb").resolve()
 
 # Override K1 defaults
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE4_QUICK_START.md` around lines 97 - 112,
Update the “Custom Thermal Parameters” example to assign a valid board_path
before passing it to ThermalValidator, while preserving the existing
ThermalParameters configuration and validation flow.
docs/internal/legacy-root/K1_HARDWARE_AUDIT_REPORT.md-29-29 (1)

29-29: 🔒 Security & Privacy | 🟡 Minor | ⚡ Quick win

Replace machine-specific absolute paths.

Paths such as /Users/spectrasynq/Workspace_Management/Software/K1.hardware/... are not portable across checkouts and expose a local username. Use repository-relative paths in the retained audit documentation.

Also applies to: 56-56, 77-77

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/K1_HARDWARE_AUDIT_REPORT.md` at line 29, Replace
the machine-specific absolute paths in the retained audit documentation with
repository-relative paths, including the references at the indicated locations.
Preserve each link or file reference target while removing the local username
and workstation-specific prefix.
docs/internal/legacy-root/PCBNEW_API_AUDIT_REPORT.md-306-314 (1)

306-314: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Reconcile the severity counts with the findings.

The report lists 2 critical, 2 high, and 2 medium findings, but the conclusion claims “4 CRITICAL, 2 HIGH.” Update the summary to match the documented findings.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PCBNEW_API_AUDIT_REPORT.md` around lines 306 - 314,
Update the “Overall Risk Assessment” summary in the Conclusion section to
reconcile its severity counts with the documented findings: report 2 critical, 2
high, and 2 medium issues, replacing the inconsistent “4 CRITICAL, 2 HIGH”
statement while preserving the other assessment details.
docs/internal/legacy-root/K1_HARDWARE_AUDIT_REPORT.md-97-141 (1)

97-141: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Reconcile the skill inventory totals.

The report states 23 total skills, while the tier breakdown sums to 21 and the grand total claims 26. Correct the definitions and totals so deployment planning is based on one consistent inventory.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/K1_HARDWARE_AUDIT_REPORT.md` around lines 97 - 141,
Reconcile the skill inventory in the tier summary and grand total so all counts
use one consistent definition: Tier 1, Tier 2, and Tier 3 must sum correctly,
and the “Total Skills” and “Grand Total” statements must clearly distinguish
documented skills from the five phase1-output skills without contradictory
totals. Update the affected headings and totals while preserving the listed
skill entries.
docs/internal/legacy-root/FREEROUTING_RESEARCH_INDEX.md-13-40 (1)

13-40: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Fix the document navigation links.

These links point only to fragments in the index rather than to the referenced files, and the generated heading fragments do not match values such as #quick-start-guide. Link to the files directly, e.g. FREEROUTING_QUICK_START.md, or use valid anchors.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/FREEROUTING_RESEARCH_INDEX.md` around lines 13 -
40, Update the navigation links in FREEROUTING_RESEARCH_INDEX.md to point
directly to the referenced Markdown files instead of invalid index fragments,
including the quick start, integration spec, DSN reference, API reference, and
research summary entries. Preserve the existing link descriptions and use valid
filenames or verified anchors.

Source: Linters/SAST tools

docs/internal/legacy-root/FREEROUTING_RESEARCH_INDEX.md-458-473 (1)

458-473: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Reconcile the documentation size totals.

The index claims 3,505 lines across five documents, then reports 3,905 lines including this index; the listed per-file totals sum to different values. Correct the totals before presenting these as quality metrics.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/FREEROUTING_RESEARCH_INDEX.md` around lines 458 -
473, Reconcile the documentation size metrics in the “File Locations” section of
FREEROUTING_RESEARCH_INDEX: recalculate the listed per-file line and size
totals, then update the stated aggregate totals so they accurately match all
referenced documents, including the index where specified.
docs/internal/legacy-root/readme-inputs/QUICKSTART.md-30-34 (1)

30-34: 🗄️ Data Integrity & Integration | 🟡 Minor | ⚡ Quick win

Fix the relocated credential-guide reference.

From docs/internal/legacy-root/readme-inputs/QUICKSTART.md, SETUP_CREDENTIALS.md is in the parent directory. Use ../SETUP_CREDENTIALS.md or a repository-root-relative link.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/QUICKSTART.md` around lines 30 - 34,
Update the credential-guide reference in QUICKSTART.md to point to the relocated
parent-directory document using ../SETUP_CREDENTIALS.md or an equivalent
repository-root-relative link.
docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md-181-181 (1)

181-181: 🗄️ Data Integrity & Integration | 🟡 Minor | ⚡ Quick win

Fix the moved-document path.

This file is in docs/internal/legacy-root/readme-inputs/, but K1_UNIFIED_SYSTEM_PRO.md is in its parent directory. The current reference will not resolve from this document; use ../K1_UNIFIED_SYSTEM_PRO.md or an explicit repository-relative link.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md` at line 181,
Update the K1_UNIFIED_SYSTEM_PRO.md link in START_HERE_PRO.md to reference the
document’s parent directory, using ../K1_UNIFIED_SYSTEM_PRO.md or an equivalent
repository-relative path.
docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md-27-58 (1)

27-58: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Make the contract example valid or mark it as pseudocode.

The json block contains ... placeholders, so it cannot be copied into tools/k1_project.json. Use a valid example or label the block as illustrative text.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md` around lines 27 -
58, Update the JSON contract example in INTEGRATION_UNIFIED_SYSTEM.md so it is
either valid, copyable JSON without ellipsis placeholders or explicitly labeled
as illustrative pseudocode. Preserve the documented structure and values while
replacing every [...] and ... placeholder or clearly marking the block as
non-JSON.
docs/internal/legacy-root/K1_UNIFIED_SYSTEM_PRO.md-42-87 (1)

42-87: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Make configuration examples syntactically valid or label them as pseudocode.

The fenced json blocks contain ... placeholders and annotations. They cannot be pasted into a JSON contract. Either provide valid complete examples or use a text/jsonc label with explicit “illustrative only” wording.

Also applies to: 290-309, 338-344

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/K1_UNIFIED_SYSTEM_PRO.md` around lines 42 - 87,
Update the configuration examples in the documented sections, including the
additional occurrences, so fenced blocks labeled json contain only syntactically
valid JSON without ellipsis placeholders or arrow annotations. Where
placeholders must remain, relabel the fences as text or jsonc and explicitly
mark them as illustrative-only pseudocode.
docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md-93-96 (1)

93-96: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Make the JSON examples valid.

The annotations are not valid JSON, so copying these snippets into k1_project_v2.json fails. Move explanatory text outside the fenced JSON or use comments in a separate non-JSON example.

Also applies to: 101-108

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md` around lines 93 -
96, Remove the inline “← Tighter (default 2.5)” annotations from the JSON
examples in START_HERE_PRO.md, including the related examples around the
referenced section, so every fenced JSON block remains valid and copyable. Move
the explanatory text outside the JSON fences or present it in a separate
non-JSON example.
docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md-411-418 (1)

411-418: 🗄️ Data Integrity & Integration | 🟡 Minor | ⚡ Quick win

Fix references relative to the relocated document.

From docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md, bare references such as agent/README.md and K1_Agent_Contract_Addon/README.txt resolve under the documentation directory, not the repository root. Use correct relative links or repository-root-relative links.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md` around lines 411 -
418, Update the references in the “Next Steps” section of
INTEGRATION_UNIFIED_SYSTEM.md, including agent/README.md and
K1_Agent_Contract_Addon/README.txt, so they resolve from the document’s
relocated directory to the repository root. Preserve the referenced targets and
surrounding instructions while using correct relative or
repository-root-relative link paths.
docs/internal/legacy-root/SETUP_CREDENTIALS.md-5-12 (1)

5-12: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Resolve the required-versus-optional contradiction.

The opening says the pipeline “requires” Nexar and LCSC credentials, but the next section says both are optional. State clearly which features require credentials and which local/offline workflows remain available.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/SETUP_CREDENTIALS.md` around lines 5 - 12, Update
the credential requirements section to distinguish credential-dependent
features—Nexar component search, datasheets, and pricing, plus LCSC assembly
pricing, stock checks, and component API—from workflows that remain available
without credentials, including basic design, manual Octopart/LCSC searches, and
cached or example RAG data; remove the contradictory claim that the pipeline
universally requires both credentials.
docs/internal/legacy-root/FREEROUTING_RESEARCH_SUMMARY.md-104-104 (1)

104-104: 🗄️ Data Integrity & Integration | 🟡 Minor | ⚡ Quick win

Update the FreeRouting version note
"Latest release 2.1.0" is stale; upstream has newer releases, so this should either be qualified as a specific tested version or updated to a non-time-sensitive statement. The install step at lines 142-144 shouldn’t imply the pipeline was exercised on 2.1.0 unless that’s documented.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/FREEROUTING_RESEARCH_SUMMARY.md` at line 104,
Update the Maintenance entry in FREEROUTING_RESEARCH_SUMMARY.md to avoid
presenting 2.1.0 as the latest release; either identify it explicitly as the
tested version or replace it with a non-time-sensitive maintenance statement.
Align the install-step wording with the documented version so it does not imply
the pipeline was exercised against an unverified release.
docs/internal/legacy-root/readme-inputs/README_TRIGGER_DEV.md-223-232 (1)

223-232: 📐 Maintainability & Code Quality | 🟡 Minor | ⚡ Quick win

Remove the machine-specific absolute path.

The /Users/spectrasynq/... path only works in the original author’s workspace and makes the document unusable elsewhere. Use repository-relative links or a generic repository-root description.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/README_TRIGGER_DEV.md` around lines
223 - 232, Remove the machine-specific absolute path from the Document Reference
section of README_TRIGGER_DEV.md and replace it with repository-relative
document links or a generic description indicating the files are located in the
repository root.
docs/internal/legacy-root/readme-inputs/README_KICAD_ANALYSIS.md-300-312 (1)

300-312: 📐 Maintainability & Code Quality | 🟡 Minor | ⚡ Quick win

Remove the author-specific filesystem path.

/Users/spectrasynq/Workspace_Management/Software/K1.hardware/ is not portable and should be replaced with repository-relative paths.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/README_KICAD_ANALYSIS.md` around
lines 300 - 312, Replace the author-specific absolute directory in the “File
Locations” section of README_KICAD_ANALYSIS.md with repository-relative path
wording, while preserving the listed filenames and their descriptions.
docs/internal/legacy-root/PHASE1_USAGE_GUIDE.md-5-13 (1)

5-13: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Do not put prerequisite bullets inside a shell block.

Users copying this block will try to execute - Python 3.8+ and - KiCad 7.0+ as shell commands.

Proposed fix
-```bash
-# Required software
-- Python 3.8+
-- KiCad 7.0+ (with kicad-cli)
-
+Required software:
+- Python 3.8+
+- KiCad 7.0+ (with `kicad-cli`)
+
+```bash
 # Check installations
 python3 --version
 kicad-cli --version
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE1_USAGE_GUIDE.md` around lines 5 - 13, Move
the “Required software” heading and prerequisite bullets outside the bash code
block in PHASE1_USAGE_GUIDE.md, keeping only the installation-check commands
inside the fenced shell block. Preserve the KiCad prerequisite wording and
format kicad-cli as inline code.

Source: Linters/SAST tools

docs/internal/legacy-root/PHASE1_USAGE_GUIDE.md-245-255 (1)

245-255: 🗄️ Data Integrity & Integration | 🟡 Minor | ⚡ Quick win

Make the ERC skip path explicit

The guide currently says ERC can be skipped for Phase 1, but the validation checklist still requires ERC passed (0 errors). Spell out whether a skipped ERC is acceptable and how that should be represented in the report so the checklist and troubleshooting steps match.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE1_USAGE_GUIDE.md` around lines 245 - 255,
Update the ERC guidance in the Phase 1 usage guide to explicitly state whether
skipping ERC is acceptable. Align the validation checklist with that decision
and specify the exact report representation for a skipped ERC, keeping the
troubleshooting instructions consistent.
docs/internal/legacy-root/readme-inputs/README_KICAD_ANALYSIS.md-37-117 (1)

37-117: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Update the relocated document links. The overview still points to sibling files that now live in docs/internal/legacy-root/, and k1_board_automation_template.py is at the repo root; ANALYSIS_SUMMARY_KICAD_9_API.txt is missing, so either restore it or remove that entry.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/README_KICAD_ANALYSIS.md` around
lines 37 - 117, The Documents Overview links are stale after the document
relocation. Update each relocated document link to reference its location under
docs/internal/legacy-root/, point k1_board_automation_template.py to its
repository-root location, and remove the ANALYSIS_SUMMARY_KICAD_9_API.txt entry
unless the missing document is restored.
docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md-493-505 (1)

493-505: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Correct the composite score calculation.

The listed scores average to approximately 6.7/10, not 7.0/10. Either change the composite score or document a weighting scheme.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md` around lines 493 - 505,
Update the “Composite Technical Score” in the Technical Viability section to
reflect the unweighted average of the listed factor scores, approximately
6.7/10, or explicitly document and apply a weighting scheme that produces
7.0/10.
docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md-331-344 (1)

331-344: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Correct the manufacturing-file count.

The heading says “Gerber Files (8 layers)” and the checklist says “All 8 files,” but the listing contains nine Gerbers, including Edge_Cuts. Clarify whether the count means copper layers or total Gerber outputs.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md` around lines
331 - 344, The manufacturing-file documentation has an inconsistent Gerber
count. Update the “Generated Files” section and related “All 8 files” references
to distinguish the eight layer Gerbers from the additional Edge_Cuts output,
using the existing filenames as the source of truth.
docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md-92-104 (1)

92-104: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Make the examples runnable by defining board_path.

These snippets use DRCValidator(board_path), DFMValidator(board_path), and SignalIntegrityValidator(board_path) without defining or importing board_path. Add a shared Path(...) setup or explicitly state that the examples depend on the earlier Quick Start block.

Also applies to: 124-139, 165-177

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md` around lines 92
- 104, Define board_path before the validation examples in
PHASE4_DESIGN_VALIDATION_README.md, using a shared pathlib.Path setup that
applies to DRCValidator, DFMValidator, and SignalIntegrityValidator snippets;
alternatively, explicitly reference the earlier Quick Start definition in each
example. Ensure all affected examples remain runnable without relying on an
undefined variable.
docs/internal/legacy-root/FREEROUTING_API_REFERENCE.md-555-561 (1)

555-561: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Quote shell variables in the wrapper.

Unquoted ${JAR} and ${BOARD} break paths containing spaces and allow glob expansion. Use "$JAR" and "${BOARD}.dsn" consistently.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/FREEROUTING_API_REFERENCE.md` around lines 555 -
561, Quote the shell variables in the Java invocation: update the JAR argument
to use "$JAR" and quote both board-derived output arguments as "${BOARD}.dsn"
and "${BOARD}.ses" to preserve paths containing spaces and prevent glob
expansion.
docs/internal/legacy-root/PHASE5_VERIFICATION_CHECKLIST.md-13-18 (1)

13-18: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Refresh the stale line-count evidence.

The deliverables table reports elite_pcb_designer.py as 730 lines, but the cited class evidence ends at Line 743. Recalculate file sizes and cited ranges from the actual files before marking deliverables complete.

Also applies to: 40-46

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE5_VERIFICATION_CHECKLIST.md` around lines 13 -
18, Refresh the deliverables table in PHASE5_VERIFICATION_CHECKLIST.md using
current measurements from elite_pcb_designer.py, elite_pcb_designer_cli.py,
test_elite_pcb_designer.py, and demo_elite_pcb_designer.py. Update each file’s
size and line count, and revise any cited line ranges so they match the actual
files before retaining the COMPLETE status.
docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md-764-779 (1)

764-779: 🎯 Functional Correctness | 🟡 Minor | ⚡ Quick win

Correct the five-year infrastructure total.

At $50–200/month, five years equals $3,000–12,000, not $3,600. The stated $9,600 total only uses $3,000 infrastructure cost, so the table needs an explicit assumption or corrected arithmetic.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md` around lines 764 - 779,
The “Full Integration” row in the “5-Year Total Cost of Ownership” table uses an
incorrect infrastructure total. Update the infrastructure and total values to
reflect $50–200/month over five years ($3,000–12,000), or explicitly document
the assumption behind a single value and ensure the total arithmetic matches it.
docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md-480-491 (1)

480-491: 📐 Maintainability & Code Quality | 🟡 Minor | ⚡ Quick win

Label the pricing table as historical
The section already frames the numbers as 2025 estimates, but it still reads like current guidance. Mark it as historical or add a source/access date so readers don’t treat the pricing and lead-time figures as up-to-date.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md` around lines
480 - 491, The JLCPCB Standard 4-Layer Pricing section should be explicitly
identified as historical rather than current guidance. Update the section
heading or accompanying note near the pricing table to state that the figures
are historical and include the relevant source/access date if available, while
preserving the existing estimates.
docs/internal/legacy-root/KICAD_API_ANALYSIS_INDEX.md-162-191 (1)

162-191: 📐 Maintainability & Code Quality | 🟡 Minor | ⚡ Quick win

Mark this as a dated snapshot. The page reads like live guidance (“NOW”, Q4/Q1 2026) but never says it’s an Oct 2025 analysis, so readers can treat the migration timeline as current. Add a brief archival note or rename it to make the scope explicit.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/KICAD_API_ANALYSIS_INDEX.md` around lines 162 -
191, Mark this document as an October 2025 archival snapshot near the API
Deprecation Timeline or document heading. Clarify that “NOW,” Q4 2025, and Q1
2026 references reflect the analysis date rather than current guidance, without
changing the documented timeline or findings.
🧹 Nitpick comments (19)
docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md (1)

35-39: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Remove the unpinned “currently 1.9.33” claim.

Record the exact FreeRouting version tested by the pipeline and keep the download instructions aligned with that artifact. A “currently latest” statement will become stale and can lead to unreproducible routing results.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md` around lines 35 - 39,
Update the FreeRouting download instructions in the quickstart documentation to
remove the unpinned “currently 1.9.33” claim, and specify the exact version
tested by the pipeline so the filename and documented artifact remain aligned
and reproducible.
docs/internal/legacy-root/KICAD_9_API_QUICK_REFERENCE.md (1)

481-492: 🩺 Stability & Availability | 🔵 Trivial | ⚡ Quick win

Clarify the KiCad 10 migration example’s prerequisites. board.Board.from_editor() only works when the KiCad editor is already running and the kicad.pcbnew wrapper is installed; standalone or headless setups should use kicad-cli instead. Add a short note or fallback so readers don’t treat this as a general import-time path.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/KICAD_9_API_QUICK_REFERENCE.md` around lines 481 -
492, Update the KiCad 10 branch around board.Board.from_editor() to explicitly
state that it requires a running KiCad editor and the installed kicad.pcbnew
wrapper. Add a concise note or fallback directing standalone/headless users to
kicad-cli, without presenting the IPC call as a general import-time path.
docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md (1)

147-147: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add a language identifier to the fenced block.

Use a fence such as text for the workflow diagram so markdownlint does not report MD040.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md` at line 147,
Update the fenced workflow diagram block in START_HERE_PRO.md to specify the
text language identifier, using a text fence so markdownlint no longer reports
MD040.

Source: Linters/SAST tools

docs/internal/legacy-root/DECISION_MATRIX_PATH_FORWARD.md (1)

340-371: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the decision-matrix diagram fence.

Use text for the ASCII scenario diagram to resolve the reported MD040 warning.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/DECISION_MATRIX_PATH_FORWARD.md` around lines 340 -
371, Label the fenced ASCII decision-matrix diagram in the documented decision
matrix with the `text` language identifier, without changing its diagram
content.

Source: Linters/SAST tools

docs/internal/legacy-root/SETUP_CREDENTIALS.md (1)

97-104: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the non-language fenced blocks.

Use text for the expected-output blocks to address the reported MD040 warnings.

Also applies to: 124-129

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/SETUP_CREDENTIALS.md` around lines 97 - 104, Label
the fenced expected-output blocks in SETUP_CREDENTIALS.md with the text language
identifier, including the block containing the mcp readiness lines and the
corresponding block at the other referenced section.

Source: Linters/SAST tools

docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md (1)

122-173: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the non-language fenced blocks.

Use text for the console output, artifact listing, repository tree, and workflow diagram to resolve the reported MD040 warnings.

Also applies to: 183-200, 217-243, 397-407

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md` around lines 122 -
173, Label the fenced blocks containing console output, artifact listings,
repository trees, and workflow diagrams with the `text` language identifier.
Update the corresponding blocks near the referenced sections while preserving
their contents and formatting.

Source: Linters/SAST tools

docs/internal/legacy-root/ELITE_PCB_DESIGNER_QUICK_START.md (1)

76-84: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the non-language fenced blocks.

The directory listing and sample console output need language identifiers, such as text, to satisfy the reported MD040 warnings.

Also applies to: 102-121

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/ELITE_PCB_DESIGNER_QUICK_START.md` around lines 76
- 84, Add a language identifier such as text to the fenced code blocks
containing the directory listing and sample console output in the quick-start
documentation, including the additional block referenced by the review. Preserve
their contents unchanged.

Source: Linters/SAST tools

docs/internal/legacy-root/K1_UNIFIED_SYSTEM_PRO.md (1)

198-207: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the non-language fenced blocks.

Use text for the output tree and file-structure diagram to resolve the reported MD040 warnings.

Also applies to: 352-370

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/K1_UNIFIED_SYSTEM_PRO.md` around lines 198 - 207,
Update the fenced blocks containing the output tree and file-structure diagrams,
including the blocks around the documented output examples, to specify the text
language. Preserve their diagram content unchanged while adding the appropriate
language label to each fence.

Source: Linters/SAST tools

docs/internal/legacy-root/readme-inputs/QUICKSTART.md (1)

37-42: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the non-language fenced blocks.

The expected-output and example-workflow fences need text identifiers to address the reported MD040 warnings.

Also applies to: 209-234

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/readme-inputs/QUICKSTART.md` around lines 37 - 42,
Update the fenced blocks in QUICKSTART.md, including the configuration-complete
output block and the additional expected-output/example-workflow blocks around
the referenced section, to specify the text language identifier. Preserve their
contents and formatting while ensuring every non-language fence is labeled.

Source: Linters/SAST tools

docs/internal/legacy-root/FREEROUTING_RESEARCH_SUMMARY.md (1)

120-129: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Label the preservation-results fence.

Use text for this diagram-like block to resolve the reported markdownlint MD040 warning.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/FREEROUTING_RESEARCH_SUMMARY.md` around lines 120 -
129, Update the fenced block in the preservation-results section to specify the
text language identifier, resolving the MD040 warning while preserving the
diagram content unchanged.

Source: Linters/SAST tools

docs/internal/legacy-root/PHASE4_ARCHITECTURE.md (1)

571-579: 🩺 Stability & Availability | 🔵 Trivial | ⚡ Quick win

Avoid caching mutable boards by path alone.

A board edited or replaced at the same path will reuse stale state, and shared mutable board objects can leak changes between validations. Key the cache by a file fingerprint and invalidate after writes, or omit this cache example.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE4_ARCHITECTURE.md` around lines 571 - 579,
Update the DesignValidation board cache so entries are not keyed only by
board_path: use a file fingerprint that detects board replacements or edits, and
invalidate the corresponding cached board after any write. Ensure validations do
not share mutable board instances across differing file contents; alternatively,
remove the _board_cache example.
docs/internal/legacy-root/SYSTEM_INDEX.md (1)

205-218: 🗄️ Data Integrity & Integration | 🔵 Trivial | ⚡ Quick win

Align the legacy K1 docs on 100×70 mm. The current contract/index/manufacturing docs use 100×70 mm, but the older designer docs still describe K1 as 50×80 mm. Update those references or mark them archival so the old outline doesn’t keep propagating.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/SYSTEM_INDEX.md` around lines 205 - 218, Update the
legacy K1 designer documentation references to use the current 100×70 mm board
dimensions, or explicitly mark documents retaining 50×80 mm as archival. Keep
the design contract entry in tools/k1_project_v2.json and its surrounding index
references aligned with the corrected dimension so the obsolete outline is not
propagated.
docs/internal/legacy-root/MCP_SETUP.md (1)

59-59: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add a language identifier to the credential block.

markdownlint reports MD040 for this fenced block; use text.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/MCP_SETUP.md` at line 59, Update the fenced
credential block in MCP_SETUP.md to specify the text language identifier,
resolving the markdownlint MD040 warning while preserving its contents.

Source: Linters/SAST tools

docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md (1)

101-101: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add language identifiers to fenced code blocks.

markdownlint reports MD040 violations for these blocks; specify text, yaml, or the appropriate language.

Also applies to: 163-163, 172-172, 198-198, 233-233

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md` at line 101, Update the
fenced code blocks in TRIGGER_DEV_ANALYSIS.md, including the blocks around the
referenced locations, to include appropriate language identifiers such as text
or yaml. Choose the identifier matching each block’s contents and ensure all
MD040 violations are resolved.

Source: Linters/SAST tools

docs/internal/legacy-root/USAGE_GUIDE.md (1)

75-75: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add language identifiers to fenced code blocks.

markdownlint reports MD040 violations throughout the output examples. Specify text where the block is not source code.

Also applies to: 148-148, 210-210, 259-259, 310-310, 358-358, 391-391, 537-537

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/USAGE_GUIDE.md` at line 75, Update the fenced code
blocks in USAGE_GUIDE.md at the referenced examples to include an explicit text
language identifier, such as text, where the contents are prose or command
output rather than source code. Ensure every listed block satisfies markdownlint
MD040 without changing its example content.

Source: Linters/SAST tools

docs/internal/legacy-root/PHASE5_VERIFICATION_CHECKLIST.md (1)

172-172: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add language identifiers to fenced output blocks.

markdownlint reports MD040 violations; specify text for these demonstration outputs.

Also applies to: 289-289

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE5_VERIFICATION_CHECKLIST.md` at line 172, Add
the text language identifier to the fenced demonstration output blocks at the
referenced locations so markdownlint MD040 passes; update only those fences.

Source: Linters/SAST tools

docs/internal/legacy-root/FREEROUTING_API_REFERENCE.md (1)

14-14: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add language identifiers to fenced code blocks.

markdownlint reports MD040 violations for these blocks; use text, http, or json as appropriate.

Also applies to: 22-22, 112-112, 243-243

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/FREEROUTING_API_REFERENCE.md` at line 14, Add
language identifiers to all fenced code blocks in FREEROUTING_API_REFERENCE.md,
including the blocks near the referenced locations, choosing text, http, or json
according to each block’s contents so markdownlint MD040 passes.

Source: Linters/SAST tools

docs/internal/legacy-root/KICAD_API_ANALYSIS_INDEX.md (1)

152-152: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add language identifiers to fenced code blocks.

markdownlint reports MD040 violations for the capability/timeline diagrams. Use text for these blocks.

Also applies to: 164-164, 298-298

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/KICAD_API_ANALYSIS_INDEX.md` at line 152, Add the
text language identifier to the fenced code blocks containing the
capability/timeline diagrams in KICAD_API_ANALYSIS_INDEX.md, including the
blocks near the referenced locations, so each opening fence uses text and
satisfies markdownlint MD040.

Source: Linters/SAST tools

docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md (1)

183-203: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Add language identifiers to fenced code blocks.

markdownlint reports multiple MD040 violations. Use identifiers such as text, json, or python so rendered documentation and linting remain consistent.

Also applies to: 243-243, 272-272, 333-333, 371-371, 499-499, 579-579, 620-620

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md` around lines
183 - 203, Add language identifiers to every fenced code block in the
documentation, including the checklist blocks near the I2C/I2S section and the
additional reported locations. Use an appropriate identifier such as text, json,
or python for each block so all MD040 violations are resolved without changing
the block contents.

Source: Linters/SAST tools


ℹ️ Review info
⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 56a5ae06-ae61-4ae1-9070-997c5b0ecf34

📥 Commits

Reviewing files that changed from the base of the PR and between 5b8d535 and 0285e4d.

📒 Files selected for processing (85)
  • .gitignore
  • AGENT_IMPLEMENTATION_COMPLETE.md
  • ANALYSIS_COMPLETE.txt
  • ANALYSIS_DELIVERABLES.txt
  • ANALYSIS_SUMMARY_KICAD_9_API.txt
  • ANALYSIS_SUMMARY_VISUAL.txt
  • ASSESSMENT_REVIEW_COMPLETE.txt
  • CAPTAIN_ASSESSMENT_VALIDATION.md
  • COMPLETION_REPORT.md
  • CRITICAL_FINDING_SILENT_FAILURES.md
  • DELIVERABLES_INDEX.md
  • DELIVERABLES_MANIFEST.md
  • DEPLOYMENT_READY.txt
  • DEPLOYMENT_VALIDATION_REPORT.md
  • ELITE_PCB_DESIGNER_COMPLETE.md
  • EXECUTION_READY.md
  • FAB_PACK_IMPLEMENTATION_COMPLETE.md
  • FORENSIC_ANALYSIS_PERSISTENCE_FAILURE.md
  • IMPLEMENTATION_COMPLETE.md
  • IMPLEMENTATION_VALIDATION_REPORT.md
  • IPC_LIBRARY_DELIVERABLES.md
  • K1_FAB_PACK_VALIDATION_REPORT.md
  • OPTION_B_FIX_VALIDATION_WITH_REAL_PCBNEW.md
  • PERSISTENCE_FAILURE_ANALYSIS_INDEX.md
  • PERSISTENCE_FAILURE_EXECUTIVE_SUMMARY.txt
  • PHASE1_COMPLETE.md
  • PHASE1_IMPLEMENTATION_SUMMARY.md
  • PHASE2_DELIVERABLES.md
  • PHASE2_IMPLEMENTATION_SUMMARY.md
  • PHASE3_IMPLEMENTATION_SUMMARY.md
  • PHASE4_FILES_MANIFEST.md
  • PHASE4_IMPLEMENTATION_SUMMARY.md
  • PHASE5_IMPLEMENTATION_SUMMARY.md
  • REAL_DATA_VALIDATION_SUMMARY.md
  • SILENT_FAILURES_FIXED_VERIFICATION.md
  • TRIGGER_DEV_ANALYSIS_SUMMARY.txt
  • TRIGGER_DEV_PHASE1_IMPLEMENTATION.md
  • TRIGGER_DEV_RECOMMENDATION.txt
  • VALIDATION_COMPLETE_HONEST_ASSESSMENT.md
  • docs/internal/legacy-root/BOARD_POPULATION_GUIDE.md
  • docs/internal/legacy-root/DECISION_MATRIX_PATH_FORWARD.md
  • docs/internal/legacy-root/DEPLOYMENT_GUIDE.md
  • docs/internal/legacy-root/DSN_FORMAT_REFERENCE.md
  • docs/internal/legacy-root/ELITE_PCB_DESIGNER_AGENT_SPEC.md
  • docs/internal/legacy-root/ELITE_PCB_DESIGNER_QUICK_START.md
  • docs/internal/legacy-root/ELITE_PCB_DESIGNER_USER_GUIDE.md
  • docs/internal/legacy-root/FREEROUTING_API_REFERENCE.md
  • docs/internal/legacy-root/FREEROUTING_INTEGRATION_SPEC.md
  • docs/internal/legacy-root/FREEROUTING_QUICK_START.md
  • docs/internal/legacy-root/FREEROUTING_RESEARCH_INDEX.md
  • docs/internal/legacy-root/FREEROUTING_RESEARCH_SUMMARY.md
  • docs/internal/legacy-root/INTEGRATION_UNIFIED_SYSTEM.md
  • docs/internal/legacy-root/IPC_LIBRARY_README.md
  • docs/internal/legacy-root/IPC_STANDARDS_SPECIFICATION.md
  • docs/internal/legacy-root/K1_FAB_PACK_QUICKSTART.md
  • docs/internal/legacy-root/K1_HARDWARE_AUDIT_REPORT.md
  • docs/internal/legacy-root/K1_UNIFIED_SYSTEM_PRO.md
  • docs/internal/legacy-root/KICAD_9_API_QUICK_REFERENCE.md
  • docs/internal/legacy-root/KICAD_9_PYTHON_API_COMPREHENSIVE_ANALYSIS.md
  • docs/internal/legacy-root/KICAD_API_ANALYSIS_INDEX.md
  • docs/internal/legacy-root/MCP_SETUP.md
  • docs/internal/legacy-root/PCBNEW_API_AUDIT_REPORT.md
  • docs/internal/legacy-root/PHASE1_USAGE_GUIDE.md
  • docs/internal/legacy-root/PHASE2_FILE_STRUCTURE.txt
  • docs/internal/legacy-root/PHASE3_AUTOMATED_ROUTING_README.md
  • docs/internal/legacy-root/PHASE4_ARCHITECTURE.md
  • docs/internal/legacy-root/PHASE4_DESIGN_VALIDATION_README.md
  • docs/internal/legacy-root/PHASE4_QUICK_START.md
  • docs/internal/legacy-root/PHASE5_VERIFICATION_CHECKLIST.md
  • docs/internal/legacy-root/PIPELINE_READINESS_CHECKLIST.md
  • docs/internal/legacy-root/QUICK_REFERENCE.txt
  • docs/internal/legacy-root/ROOT_CAUSE_CODE_EVIDENCE.txt
  • docs/internal/legacy-root/ROOT_CAUSE_TECHNICAL_REFERENCE.md
  • docs/internal/legacy-root/RUN_UNIFIED_SYSTEM.md
  • docs/internal/legacy-root/SETUP_CREDENTIALS.md
  • docs/internal/legacy-root/SYSTEM_INDEX.md
  • docs/internal/legacy-root/TRIGGER_DEV_ANALYSIS.md
  • docs/internal/legacy-root/USAGE_GUIDE.md
  • docs/internal/legacy-root/readme-inputs/QUICKSTART.md
  • docs/internal/legacy-root/readme-inputs/README_COMPONENT_PLACEMENT.md
  • docs/internal/legacy-root/readme-inputs/README_ELITE_PCB_DESIGNER.md
  • docs/internal/legacy-root/readme-inputs/README_KICAD_ANALYSIS.md
  • docs/internal/legacy-root/readme-inputs/README_PHASE1.md
  • docs/internal/legacy-root/readme-inputs/README_TRIGGER_DEV.md
  • docs/internal/legacy-root/readme-inputs/START_HERE_PRO.md
💤 Files with no reviewable changes (38)
  • TRIGGER_DEV_RECOMMENDATION.txt
  • DELIVERABLES_INDEX.md
  • ANALYSIS_COMPLETE.txt
  • PERSISTENCE_FAILURE_ANALYSIS_INDEX.md
  • ASSESSMENT_REVIEW_COMPLETE.txt
  • PHASE4_IMPLEMENTATION_SUMMARY.md
  • PHASE1_COMPLETE.md
  • CAPTAIN_ASSESSMENT_VALIDATION.md
  • ANALYSIS_SUMMARY_KICAD_9_API.txt
  • DEPLOYMENT_READY.txt
  • ANALYSIS_DELIVERABLES.txt
  • EXECUTION_READY.md
  • DELIVERABLES_MANIFEST.md
  • VALIDATION_COMPLETE_HONEST_ASSESSMENT.md
  • PHASE4_FILES_MANIFEST.md
  • K1_FAB_PACK_VALIDATION_REPORT.md
  • PERSISTENCE_FAILURE_EXECUTIVE_SUMMARY.txt
  • DEPLOYMENT_VALIDATION_REPORT.md
  • TRIGGER_DEV_PHASE1_IMPLEMENTATION.md
  • TRIGGER_DEV_ANALYSIS_SUMMARY.txt
  • PHASE5_IMPLEMENTATION_SUMMARY.md
  • IMPLEMENTATION_COMPLETE.md
  • FAB_PACK_IMPLEMENTATION_COMPLETE.md
  • OPTION_B_FIX_VALIDATION_WITH_REAL_PCBNEW.md
  • ANALYSIS_SUMMARY_VISUAL.txt
  • SILENT_FAILURES_FIXED_VERIFICATION.md
  • PHASE3_IMPLEMENTATION_SUMMARY.md
  • COMPLETION_REPORT.md
  • PHASE2_DELIVERABLES.md
  • IMPLEMENTATION_VALIDATION_REPORT.md
  • PHASE1_IMPLEMENTATION_SUMMARY.md
  • FORENSIC_ANALYSIS_PERSISTENCE_FAILURE.md
  • AGENT_IMPLEMENTATION_COMPLETE.md
  • PHASE2_IMPLEMENTATION_SUMMARY.md
  • CRITICAL_FINDING_SILENT_FAILURES.md
  • REAL_DATA_VALIDATION_SUMMARY.md
  • ELITE_PCB_DESIGNER_COMPLETE.md
  • IPC_LIBRARY_DELIVERABLES.md

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docs/internal/legacy-root/KICAD_9_PYTHON_API_COMPREHENSIVE_ANALYSIS.md (1)

729-738: 🗄️ Data Integrity & Integration | 🔴 Critical | ⚡ Quick win

Reject traces between pads on different nets.

The helper assigns the trace to pad1’s net without checking pad2. Calling it with pads from different nets creates an electrical short; calling it with an unconnected pad can also dereference None.

Proposed fix
     pad_net = pad1.GetNet()
+    if pad_net is None or pad2.GetNet() != pad_net:
+        raise ValueError("Pads must belong to the same non-empty net")
     track.SetNet(pad_net)
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

    # Assign to same net as pads
    pad_net = pad1.GetNet()
    if pad_net is None or pad2.GetNet() != pad_net:
        raise ValueError("Pads must belong to the same non-empty net")
    track.SetNet(pad_net)

    # Add to board
    board.Add(track)
    board.Save(board_path)

    print(f"✓ Created trace {ref1}.{pad_num1} → {ref2}.{pad_num2}")
    print(f"  Width: {width_mm}mm, Layer: {layer}, Net: {pad_net.GetNetname()}")
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@docs/internal/legacy-root/KICAD_9_PYTHON_API_COMPREHENSIVE_ANALYSIS.md`
around lines 729 - 738, Update the trace-creation helper before assigning the
net or adding the track to validate both pads’ nets: reject mismatched nets and
reject an unconnected net on either pad, returning without creating or saving
the trace. Only proceed with SetNet, board.Add, and board.Save when both pads
share a valid net, and retain the existing success output for that path.

@synqing
synqing merged commit 41911ab into feat/mcp-rag-bootstrap Jul 12, 2026
1 of 3 checks passed
@synqing
synqing deleted the cleanup/root-files branch July 12, 2026 07:13
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