🔗 Live Interactive App: Launch DNA Analyzer
https://siddharth-lab-cmd-python-bioinformatics-basics-app-k9rrht.streamlit.app/
Welcome to an advanced suite of production-grade computational biology tools. This repository features 36 custom scientific scripts designed to parse genomic matrices, execute complex sequence alignments, and handle heavy data engineering workflows.
- Cloud Automation Engine: Backed by 41 active matrix workflows for rapid continuous integration.
- Interdisciplinary Logic: Built with an advanced analytical mindset combining ICSE-level structural logic, mathematical chess variations, and practical application fields.
- Rote-Free Engineering: Zero hardcoded strings. Every script is a dynamic tool built for data reproducibility.
global_alignment_needleman.py- Complete dynamic programming matrix implementation for optimal global sequence alignments.fastq_quality_filter.py- High-throughput quality scoring and filtering pipeline for raw sequencing files.vcf_variant_parser.py- Heavy-duty matrix filtering to extract SNP and variant calls from structural variant files.
food_pathogen_pcr_primer_designer.py- Algorithmic primer design pipeline built to track foodborne bacterial contamination.phylogenetic_distance_matrix.py- Generates distance matrices to calculate evolutionary trees across agricultural samples.
- Includes scripts for custom file format conversion, matrix math operations using NumPy, and fast cellular table parsing pipelines.
Recruiters can run our core alignment module with standard inputs:
Sequence A: ATCGATCG
Sequence B: ATGGATCG
[INFO] Initializing Dynamic Programming Scoring Matrix (Match: +1, Mismatch: -1, Gap: -2)
[MATRIX] Shape: (9, 9) successfully initialized.
[ALIGNMENT] Score: 4
[RESULT] Sequence A: ATCGATCG
Sequence B: ATGGATCG
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- Languages: Python 3.x
- Data Engineering: Pandas, NumPy
- Scientific Parsing: Biopython, Advanced String Slicing
Maintained with tactical precision by Siddharth-lab-cmd.