error creating the BAM file

[Niazevedo]

Hi I'm trying to create the BAM file and it gives an error.
I have installed recycler using bioconda.

This is the error:

Danielas-Mac:Recycler niazevedo$ make_fasta_from_fastg.py -g assembly_graph1.fastg
Traceback (most recent call last):
File "/Users/niazevedo/anaconda/bin/make_fasta_from_fastg.py", line 4, in
import('pkg_resources').run_script('recycler==0.6', 'make_fasta_from_fastg.py')
File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/init.py", line 744, in run_script
File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/init.py", line 1506, in run_script
File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/recycler-0.6-py2.7.egg/EGG-INFO/scripts/make_fasta_from_fastg.py", line 3, in
requires = 'recycler==0.6'
File "/Users/niazevedo/anaconda/bin/recycle.py", line 4, in
import('pkg_resources').run_script('recycler==0.6', 'recycle.py')
File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/init.py", line 744, in run_script
File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/init.py", line 1506, in run_script
File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/recycler-0.6-py2.7.egg/EGG-INFO/scripts/recycle.py", line 5, in

File "/Users/niazevedo/anaconda/lib/python2.7/site-packages/pysam/init.py", line 5, in
from pysam.libchtslib import *
ImportError: dlopen(/Users/niazevedo/anaconda/lib/python2.7/site-packages/pysam/libchtslib.so, 2): Library not loaded: @rpath/libhts.1.dylib
Referenced from: /Users/niazevedo/anaconda/lib/python2.7/site-packages/pysam/libchtslib.so
Reason: image not found

[rozovr]

It looks like an installation problem - have you tried the non-bioconda install steps?