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Sentieon / sentieon-cli Public

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Pangenome#14

Merged

DonFreed merged 19 commits into

devSentieon/sentieon-cli:devfrom

pangenomeSentieon/sentieon-cli:pangenomeCopy head branch name to clipboard

Aug 21, 2025

Conversation Commits19 (19)Checks Files changed

Merged

Pangenome#14
DonFreed merged 19 commits into
devfrom
pangenome

Commits

Commits on Aug 7, 2025

Update .gitignore
DonFreed
committed
Initial commit of pangenome pipeline
DonFreed
committed
Minor pangenome fixes
DonFreed
committed
Make some arguments optional
DonFreed
committed
pangenome - fix a dry-run error
DonFreed
committed
Formatting
DonFreed
committed
pangenome - minor fixes
DonFreed
committed
pangenome - minor fix
DonFreed
committed
Use the aligned bam in T1K
DonFreed
committed
Overwrite the header of the SV vcf
DonFreed
committed
Fix a typo
DonFreed
committed
pangenome - minor fixes
DonFreed
committed
Add pangenome documentation
DonFreed
committed
formatting
DonFreed
committed
Update the README
DonFreed
committed

Commits on Aug 11, 2025

Update the executor to handle Ctrl-C and log stage runtimes.
DonFreed
committed
Formatting
DonFreed
committed

Commits on Aug 18, 2025

Pangenome updates
DonFreed
committed
Add model bundle validation
DonFreed
committed

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