Full_mitochondrial_genomes

This repository contains scripts and files used in the analysis of full mitochondrial genomes from sub-Saharan African individuals. Data was generated using long-range sequencing on PacBio Sequel 2.

Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
BSP_XML_example.xml		BSP_XML_example.xml
DeepVariant.sh		DeepVariant.sh
GATK_bam_to_fasta.sh		GATK_bam_to_fasta.sh
MT_alignment_mafft.sh		MT_alignment_mafft.sh
README.md		README.md
Tree_XML_example.xml		Tree_XML_example.xml
determine_MT_coverage.sh		determine_MT_coverage.sh
doubleHumanMito.fasta		doubleHumanMito.fasta
doubleHumanMito.fasta.fai		doubleHumanMito.fasta.fai
haplogrep.sh		haplogrep.sh
running_BEAST.sh		running_BEAST.sh
vcf_to_fasta.sh		vcf_to_fasta.sh

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