Issues

• pipeline crashes if conda is already active

  bug
  SaundersLab/marple-pgt#16 · Filter by author tonytony99 opened on Jun 7, 2023 · Workshop Issues

• Report total number of SNPs found in each sample

  enhancement
  SaundersLab/marple-pgt#15 · Filter by author tonytony99 opened on Jun 1, 2023 · Workshop Issues
  

• make a table of SNPs for fungicide target genes

  enhancement
  SaundersLab/marple-pgt#10 · Filter by author tonytony99 opened on Mar 1, 2023
  1

  

• add overall coverage for tree input for each sample

  enhancement
  SaundersLab/marple-pgt#9 · Filter by author tonytony99 opened on Feb 28, 2023
  

• reads_to_cds_concat crashes if there are no SNPs

  bug
  SaundersLab/marple-pgt#8 · Filter by author tonytony99 opened on Feb 21, 2023
  

• filter read length misses the last read

  bug
  SaundersLab/marple-pgt#7 · Filter by author tonytony99 opened on Jan 25, 2023
  1

  

• add tests

  SaundersLab/marple-pgt#6 · Filter by author tonytony99 opened on Nov 24, 2022

• color isolates on tree by pct coverage in the tree input file

  SaundersLab/marple-pgt#4 · Filter by author tonytony99 opened on Nov 18, 2022

• fix tree input

  SaundersLab/marple-pgt#3 · Filter by author tonytony99 opened on Nov 14, 2022