Hi, I have gone through the PECA pipeline without ENCODE. But I don't find the result related to CRS mentionded in TimeReg article, neither in the source code. It is supposed to build a curated network based on TRS and CRS filtering according to the article. But I find the RE-TG pairs in the present pipeline are simply identied by overlap with prior data, which is generatted by a linear model in our cases.
Is it my misunderstanding?
Hi, I have gone through the PECA pipeline without ENCODE. But I don't find the result related to CRS mentionded in TimeReg article, neither in the source code. It is supposed to build a curated network based on TRS and CRS filtering according to the article. But I find the RE-TG pairs in the present pipeline are simply identied by overlap with prior data, which is generatted by a linear model in our cases.
Is it my misunderstanding?