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PDB BLAST is no longer available

Status: Open.

#59 In SBRG/ssbio;

· Schmoho opened on Sep 3, 2025

Returns empty df for AlphaFoldDB files

Status: Open.

#58 In SBRG/ssbio;

· knowmili opened on Sep 23, 2024

ImportError: cannot import name 'one_to_three' from 'Bio.PDB.Polypeptide'

Status: Open.

#57 In SBRG/ssbio;

· miri-2000 opened on Apr 29, 2024

ImportError: cannot import name 'Mapping' from 'collections'

Status: Open.

#56 In SBRG/ssbio;

· wook2014 opened on Dec 23, 2023

MSMS installation on MacOS

Status: Open.

#55 In SBRG/ssbio;

· gcroci2 opened on Sep 13, 2023

Difficulty installing SSBIO package due to dependency conflicts

Status: Open.

#54 In SBRG/ssbio;

· MaryAnnEbeling opened on Jul 6, 2023

tmhmm installtion and running

Status: Open.

#53 In SBRG/ssbio;

· kishor2019 opened on Oct 6, 2021

mapping pdb resnum to uniprot resnum

Status: Open.

#51 In SBRG/ssbio;

· JoshuaMeyers opened on Nov 26, 2020

Import Error - Bio.Alphabet has been removed from Biopython

Status: Open.

#50 In SBRG/ssbio;

· a-r-j opened on Oct 27, 2020

Use of .ix indexing is deprecated in pandas & no pandas version specified in requirements.

Status: Open.

#49 In SBRG/ssbio;

· a-r-j opened on Aug 24, 2020

characterize_residue_mutation will only return properties defined in EXTENDED_AA_PROPERTY_DICT_ONE

bug

Status: Open.

#48 In SBRG/ssbio;

· pvphaneuf opened on May 30, 2020

Fail to read P00533

Status: Open.

#47 In SBRG/ssbio;

· bkellman opened on May 11, 2018