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Import STAGATE Error

Status: Open.

#24 In RucDongLab/STAGATE;

· AIBio opened on Jun 15, 2024

关于计算空间网络时出现------The graph contains 0 edges, 929 cells. 0.0000 neighbors per cell on average.

Status: Open.

#23 In RucDongLab/STAGATE;

· BioinAI opened on Jun 12, 2024

About trajectory analysis

Status: Open.

#22 In RucDongLab/STAGATE;

· evenDDDDD opened on Aug 22, 2023

sparse_placeholder is not compatible with eager execution.

Status: Open.

#21 In RucDongLab/STAGATE;

· Gandalf-1127 opened on May 8, 2023

Question about how to get a finer spatial structure

Status: Open.

#20 In RucDongLab/STAGATE;

· Changzhanhe opened on Apr 21, 2023

Questions about UMAP visualization

Status: Open.

#19 In RucDongLab/STAGATE;

· czwdcm opened on Mar 18, 2023

I think this part in model.py is wrong.

Status: Open.

#18 In RucDongLab/STAGATE;

· SanoKyohei opened on Feb 6, 2023

Severe batch effect after denoising.

Status: Open.

#16 In RucDongLab/STAGATE;

· EddieLv opened on Oct 29, 2022

error raised when denoising

Status: Open.

#14 In RucDongLab/STAGATE;

· dhy2002 opened on Sep 14, 2022

About datasets used in your paper: How to get Layer structure labels of STARmap dataset?

Status: Open.

#11 In RucDongLab/STAGATE;

· BinDuan opened on Sep 3, 2022

The ARI result of DLPFC 151676 dataset

Status: Open.

#6 In RucDongLab/STAGATE;

· HappyLife-together opened on Jun 8, 2022

Problem in env's building and skmisc

Status: Open.

#5 In RucDongLab/STAGATE;

· xiao-kong-long opened on May 7, 2022