Issues

• Pyclone Input

  Roth-Lab/pyclone#28 · Filter by author sunyu1010 opened on Nov 19, 2023

• Reproducibility issue

  Roth-Lab/pyclone#27 · Filter by author jamelee opened on Apr 28, 2023
  1

• Reproducility issue

  Roth-Lab/pyclone#26 · Filter by author jamelee opened on Apr 28, 2023

• Preparing input files for pyclone from Varscan output snp files

  Roth-Lab/pyclone#25 · Filter by author maheshworpaudel5001 opened on Mar 3, 2023

• Should at least one mutation id overlap between any two of the input samples?

  Roth-Lab/pyclone#24 · Filter by author lincj1994 opened on May 2, 2022

• ref_count and var_count input for Pyclone

  Roth-Lab/pyclone#22 · Filter by author TnakaNY opened on Jan 21, 2021
  3

• minor_cn equal to the major_cn

  Roth-Lab/pyclone#20 · Filter by author pawelqs opened on Jan 16, 2021

• how to use private somation mutation in pyclone?

  Roth-Lab/pyclone#19 · Filter by author YunjieSong opened on Aug 20, 2020
  1

• ImportError: No module named cli

  Roth-Lab/pyclone#16 · Filter by author dawe opened on Mar 23, 2020
  1

• How to classify subclone from PyClone result

  Roth-Lab/pyclone#14 · Filter by author bioxu opened on Jan 10, 2020

• Modify x label rotations in parallel_coordinates?

  Roth-Lab/pyclone#13 · Filter by author wangshun1121 opened on Nov 4, 2019

• recommended inputs for whole exome sequencing data

  Roth-Lab/pyclone#12 · Filter by author JakeConway opened on Jun 19, 2019

• Strange values for cellular prevalence and variant allele frequency>?

  Roth-Lab/pyclone#11 · Filter by author jmchan88 opened on Jun 18, 2019
  1

• Mutations in common not found across yamls

  Roth-Lab/pyclone#9 · Filter by author schianta opened on Jun 4, 2019
  3

• Can Python3 use Pyclone?

  Roth-Lab/pyclone#8 · Filter by author yanglq-bio opened on Apr 18, 2019
  1

• Fail to reproduce tutorial sample results in 2014 paper

  Roth-Lab/pyclone#7 · Filter by author gengyuncong opened on Apr 18, 2019
  1

• No pdfs under result/plots/loci

  Roth-Lab/pyclone#6 · Filter by author Tina9 opened on Mar 20, 2019

• cannot cache function 'log_beta'

  Roth-Lab/pyclone#5 · Filter by author av-jt opened on Dec 6, 2018
  5

• run testfile meet error

  Roth-Lab/pyclone#4 · Filter by author WRui opened on Dec 5, 2018

• Incorrect if statement

  Roth-Lab/pyclone#2 · Filter by author janka2012 opened on Jul 4, 2018

• ValueError: gammavariate: alpha and beta must be > 0.0

  Roth-Lab/pyclone#1 · Filter by author 1988liszt opened on Jul 11, 2017
  4