Issues

• Additional cluster filtering by comparison to cosmic signatures to exclude clusters with high proportion of likely artefact mutations

  Roth-Lab/pyclone-vi#45 · Filter by author SanneHoe opened on Oct 20, 2025
  1

• Is there a dataset of TCGA pyclone-vi analysis result?

  Roth-Lab/pyclone-vi#43 · Filter by author ipstone opened on Nov 25, 2024
  1

• Creating Pyclone-VI input file from ASCAT and Strelka2 tool outputs

  Roth-Lab/pyclone-vi#42 · Filter by author sreerampeela opened on Oct 18, 2024

• Install pyclone-vi on Galaxy Europe

  Roth-Lab/pyclone-vi#41 · Filter by author bdartigues opened on Jul 12, 2024

• explain major and minor cn for pyclone input

  Roth-Lab/pyclone-vi#40 · Filter by author endertial opened on Jul 2, 2024
  2

• input data query

  Roth-Lab/pyclone-vi#37 · Filter by author bagieutopia opened on May 4, 2024

• Error while running sub-command fit

  Roth-Lab/pyclone-vi#36 · Filter by author AntoniaChroni opened on Nov 9, 2023
  3

• How can one tell from the results whether a mutation is clonal or not?

  Roth-Lab/pyclone-vi#35 · Filter by author THT-sleepy opened on Nov 9, 2023

• too less clones in results

  Roth-Lab/pyclone-vi#34 · Filter by author songmingl opened on Oct 23, 2023

• Error in running example file, how to solve this error?

  Roth-Lab/pyclone-vi#32 · Filter by author parth2608 opened on Sep 5, 2023

• Questions about the calculation of CCF

  Roth-Lab/pyclone-vi#30 · Filter by author huerqiang opened on Jul 1, 2023

• Please add numpy version to requirements.txt

  Roth-Lab/pyclone-vi#28 · Filter by author rabiafidan opened on May 26, 2023
  1

• Pre-processing query

  Roth-Lab/pyclone-vi#27 · Filter by author seedgeorge opened on Mar 23, 2023
  2

• mutations with no data in some samples

  Roth-Lab/pyclone-vi#26 · Filter by author ZWael opened on Mar 6, 2023
  5

• Cluster assignment probability filtering

  Roth-Lab/pyclone-vi#23 · Filter by author rpensch opened on May 17, 2022
  1

• Data loading issue

  Roth-Lab/pyclone-vi#22 · Filter by author mda-hillmanlab opened on May 8, 2022
  4

• running Pyclone-VI with total copy number

  Roth-Lab/pyclone-vi#19 · Filter by author bhinderb opened on Oct 26, 2021
  2

• Interpretation of the results

  Roth-Lab/pyclone-vi#18 · Filter by author YanaVassileva opened on Aug 5, 2021
  1

• Subclonal copy number of segment overlapping mutation

  Roth-Lab/pyclone-vi#17 · Filter by author underbais opened on Jun 17, 2021

• Interpret resulting information

  Roth-Lab/pyclone-vi#16 · Filter by author Antioxidantcoco opened on May 10, 2021

• installation issue

  Roth-Lab/pyclone-vi#15 · Filter by author Subhayan18 opened on Apr 21, 2021
  4

• Odd errors in larger data sets?

  Roth-Lab/pyclone-vi#12 · Filter by author vortexing opened on Feb 23, 2021
  1

• CCF estimation for minor_cn=0

  Roth-Lab/pyclone-vi#6 · Filter by author xliu-uth opened on Oct 29, 2020
  1

• "cellular_prevalence_std" of some "cluster_id" are missing.

  Roth-Lab/pyclone-vi#3 · Filter by author b-niu opened on Sep 10, 2020
  3