Installation

THIS PAGE IS A WORK IN PROGRESS

Installing JointSNVMix

Download

The source code implemented in Python is available under an open source license. The software can be downloaded from the downloads page. Currently Linux is supported.

Dependencies

Though not explicitly required by the JointSNVMix software, samtools can be useful for creating bam, bam index and fasta index files that are required by JointSNVMix.

Before installing the software the following libraries are required.

• Python >= 2.7

Installing Joint SNV Mix

Once all dependencies have been installed JointSNVMix can be installed as follows.

• tar -zxvf JointSNVMix-x.y.z.tar.gz
• cd JointSNVMix-x.y.z
• python setup.py install

There is also config/ folder alongside the setup.py file. This folder contains example priors, and parameters files for running the JointSNVMix software. It may be useful to copy this somewhere easily accessible.