Fix/update packages to address security alert#89
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nscorley
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Jun 9, 2026
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Thank you! One small question about torch requirements
| ml = [ | ||
| # atomworks-ml dependencies | ||
| "torch>=2.2.0", | ||
| "torch>=2.8.0", |
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What is the reason we need this torch bump? It's a pretty important dependency and I know of some projects that were using 2.7
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This was based on this alert, but we can revert it back to 2.2.0 for now.
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📋 PR Checklist
This PR is tagged as a draft if it is still under development and not ready for review.
I have ensured that all my commits follow angular commit message conventions.
I have run
make formaton the codebase before submitting the PR (this autoformats the code and lints it).I have named the PR in angular PR message format as well (c.f. above), with a sensible tag line that summarizes all the changes in the PR.
ℹ️ PR Description
This PR updates packages in pyproject.toml to address security risks
What changes were made and why?
Updated packages are:
urlib3, pillow, idna, requests, filelock, cryptography, tornado, python-dotenv, pygments
How were the changes tested?
I ran the slow and not slow tests locally. I did not run the benchmark tests locally.
Additional Notes