Orientation Normalization of Multi-Stain Skin Tissue Cross-Sections

This repository contains all code to support the paper:

"Orientation Normalization of Multi-Stain Skin Tissue Cross-Sections"

Accepted at MIDL 2026.

[OpenReview] [PLMR]

Contents

The repository contains two folders:

• dataset_curation contains all python files that were used for annotation and preprocessing of the dataset.
• models contains all python files that were used for training and evaluation of the different rotation angle prediction approaches.
  • Parameters for the rotation angle prediction models trained as part of this project are available from the corresponding HuggingFace repository.

Citing

If you found our work useful in your research, please consider citing our paper:

@InProceedings{topolnjak2026orientation,
  title={Orientation Normalization of Multi-Stain Skin Tissue Cross-Sections},
  author={Topolnjak, Ema and Paulides, Evi and Blokx, Willeke A. M. and Veta, Mitko and Lucassen, Ruben T.},
  booktitle={Proceedings of The 9th International Conference on Medical Imaging with Deep Learning},
  pages={322--341},
  year={2026},
  volume={315},
  publisher={PMLR},
}