Update neg growth handling to be an actual limitation check - #368

Merged

Alomir merged 42 commits into

SIPxxx-formalize-negative-growth-handling-and-limitation-checks

Aug 19, 2026

Commits on Aug 1, 2026

Initial implementation of C-N revamp plus associated changes
Alomir
committed
84497be
Remove lingering plantWoodCStorageDelta instances
Alomir
committed
dc5c6be
Add N resorption for negative NPP
Alomir
committed
79e7f7d
Add updateNResorptionFlux
Alomir
committed
3d36f4a
Updates for N resorption
Alomir
committed
4ec38fa
Fix index check in restart
Alomir
committed
394b8b9

Commits on Aug 3, 2026

Fix DEBUG
Alomir
committed
0a9f751
Final tweaks for C/N revamp
Alomir
committed
60a1543
Add cleanup of russell_1 directory
Alomir
committed
b3a026e
SIP350 Update carbon accounting + plant mortality (#360)

Copilot
and
Alomir
authored
b3da5de
Updates for #359
Alomir
committed
a9c7c9f
Bring initPlantSurvivalTracker up to same logic as checkMortality

Alomir
and
Copilot
authored
ed673a7
Tweaks for consistency and reliability
Alomir
committed
57ee911
Change to not run() if init() fails
Alomir
committed
d75f798
Add size of survival trackers struct to schema
Alomir
committed
6397a0e
Change so plantdeath in events.in is now an error
Alomir
committed
0ff972d

Commits on Aug 6, 2026

Update for latest C/N refactor
Alomir
committed
aba849b
Minor tweaks
Alomir
committed
38a48b6
Update for latest C/N refactor
Alomir
committed
5c35ce4
Update for latest C/N refactor
Alomir
committed
216f8a5
Update with less extreme baseFineRootResp
Alomir
committed
3712e49
Fix meanNPP tracking
Alomir
committed
729ce7a
Reduced nVolFrac param
Alomir
committed
8b2fe99

Commits on Aug 8, 2026

fix: reject plantdeath input events

Copilot
and
dlebauer
authored
58e751d
revert: split plantdeath validation from branch

Copilot
and
dlebauer
authored
cf39875

Commits on Aug 11, 2026

Update post feedback; now use plantStorageN before fixation/uptake
Alomir
committed
43a7251

Commits on Aug 12, 2026

Update for new N storage mechanism
Alomir
committed
6119302
Add check for totalMass < TINY in harvest handling
Alomir
committed
45a3903
Updates from feedback
Alomir
committed
7afd881

Commits on Aug 14, 2026

Commits on Aug 18, 2026

Merge branch 'master' into SIPxxx-formalize-negative-growth-handling-and-limitation-checks
Alomir
authored
2a415e0
Remove obsolete function call
Alomir
committed
89a487e
Add stronger check for negative growth occurrence
Alomir
committed
f0f3a50
Change to only consider turnover leaf litter, as per previous logic
Alomir
committed
d310bb6
Move leaf-off N resorp into nitrogen.c:calcNResorptionFluxes
Alomir
committed
f48ba79
Update doc for calcNitrogenFluxes
Alomir
committed
78c24fd
Minor tweak
Alomir
committed
41f0385
Add tests for negative fine/coarse root pools
Alomir
committed
fc27357

Commits on Aug 19, 2026

Update for #368
Alomir
committed
c9222db