SIP350 Update carbon accounting + plant mortality - #359

Merged

dlebauer merged 34 commits into

SIP350-Redux-Revamp-C-N-Handling

Aug 14, 2026

Commits on Aug 1, 2026

Initial implementation of C-N revamp plus associated changes
Alomir
committed
84497be
Remove lingering plantWoodCStorageDelta instances
Alomir
committed
dc5c6be
Add N resorption for negative NPP
Alomir
committed
79e7f7d
Add updateNResorptionFlux
Alomir
committed
3d36f4a
Updates for N resorption
Alomir
committed
4ec38fa
Fix index check in restart
Alomir
committed
394b8b9

Commits on Aug 3, 2026

Fix DEBUG
Alomir
committed
0a9f751
Final tweaks for C/N revamp
Alomir
committed
60a1543
Add cleanup of russell_1 directory
Alomir
committed
b3a026e
SIP350 Update carbon accounting + plant mortality (#360)

Copilot
and
Alomir
authored
b3da5de
Updates for #359
Alomir
committed
a9c7c9f
Bring initPlantSurvivalTracker up to same logic as checkMortality

Alomir
and
Copilot
authored
ed673a7
Tweaks for consistency and reliability
Alomir
committed
57ee911
Change to not run() if init() fails
Alomir
committed
d75f798
Add size of survival trackers struct to schema
Alomir
committed
6397a0e
Change so plantdeath in events.in is now an error
Alomir
committed
0ff972d

Commits on Aug 6, 2026

Update for latest C/N refactor
Alomir
committed
aba849b
Minor tweaks
Alomir
committed
38a48b6
Update for latest C/N refactor
Alomir
committed
5c35ce4
Update for latest C/N refactor
Alomir
committed
216f8a5
Update with less extreme baseFineRootResp
Alomir
committed
3712e49
Fix meanNPP tracking
Alomir
committed
729ce7a
Reduced nVolFrac param
Alomir
committed
8b2fe99

Commits on Aug 8, 2026

fix: reject plantdeath input events

Copilot
and
dlebauer
authored
58e751d
revert: split plantdeath validation from branch

Copilot
and
dlebauer
authored
cf39875

Commits on Aug 11, 2026

Update post feedback; now use plantStorageN before fixation/uptake
Alomir
committed
43a7251

Commits on Aug 12, 2026

Update for new N storage mechanism
Alomir
committed
6119302
Add check for totalMass < TINY in harvest handling
Alomir
committed
45a3903
Updates from feedback
Alomir
committed
7afd881

Commits on Aug 14, 2026

Update to remove incoming plantStorageN from plantAvailableN
Alomir
committed
06de31d
Add mortality coverage for negative wood accounting

Copilot
and
dlebauer
authored
deba77d
Clarify mortality test expectation

Copilot
and
dlebauer
authored
b39cdcc
Clarify mortality test comment

Copilot
and
dlebauer
authored
43b6b47
Update AGAIN for better N limit checking
Alomir
committed
95f8f5e