Fix NumPy 2.x compatibility: replace removed np.in1d with np.isin - #3054
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np.in1d was deprecated in NumPy 1.25 and removed from the main namespace in NumPy 2.x, but pyproject.toml pins numpy>=2. Several core functions therefore raise 'AttributeError: module numpy has no attribute in1d' on a supported NumPy version, breaking e.g. find_nearby_pores, site/bond percolation cluster filtering and neighbor queries. Replace the remaining np.in1d call sites with np.isin, the documented drop-in replacement (identical semantics for 1-D inputs, including the invert= keyword). The codebase already uses np.isin elsewhere, so this also unifies the idiom.
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## dev #3054 +/- ##
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Coverage 87.8% 87.8%
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Files 151 151
Lines 8882 8882
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Hits 7804 7804
Misses 1078 1078 🚀 New features to boost your workflow:
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I am trying to get the CI to run on the PR. I cannot seem to make it happen on the PR from @gaoflow's PR, so I created a new branch and pushed it.