Add support for BNGL models#501

Open

wshlavacek wants to merge 7 commits into

PEtab-dev:mainfrom

wshlavacek:bngl_model_support

Commits on Jul 5, 2026

Add support for BNGL models as a PEtab model language
wshlavacek
committed
Harden the BNGL block reader: block aliases + seed-species $ clamp
wshlavacek
committed
Harden the BNGL block reader: join line continuations
wshlavacek
committed
Harden the BNGL block reader: strip line labels (index + named)
wshlavacek
committed
Add a corpus regression gate: parse_bngl vs a cached BNG2.pl golden
wshlavacek
committed
Match BNG2.pl: drop the `molecules`/`rules` block aliases (keep `species`)
wshlavacek
committed
Make None defaults Optional and pin utf-8 in to_file
wshlavacek
committed