Skip to content

Huggingface - #11

Open
OberonDixon wants to merge 2 commits into
mainfrom
huggingface
Open

Huggingface#11
OberonDixon wants to merge 2 commits into
mainfrom
huggingface

Conversation

@OberonDixon

Copy link
Copy Markdown
Owner

The core of this change is to allow for auto-loading of a model checkpoint from https://huggingface.co/OberonDixon/methylseqnet. Currently I only have one checkpoint there: Borzoi, rep0, factorized v1.0. The interface supports extending to other base models (e.g. AlphaGenome, Basenji2) and different release versions. Only the predict pipeline is impacted; train and preprocess are unchanged. There is enough test coverage that it should be detectable if code changes to the core repo break compatibility with the huggingface-released checkpoint.

@OberonDixon
OberonDixon requested a review from ayesharbajwa June 23, 2026 22:13

@ayesharbajwa ayesharbajwa left a comment

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Consider adding from_local for the model ConditionedSeqNN class as well (currently just implemented for the Predictor class, but there are use cases for instantiating the model from local weights in non-prediction scenarios as well)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants