Release v1.5 - #290
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* fixed data types and added cdm_version_concept_id * missed col value * target_id as int * changed yes/no
* multiple analysis * add table to data model * fix to data model * fixed test cases * better error handling Update TreatmentPatternsModule.Rd * Issue 255 treatment patterns data model (#272) * fixed data types and added cdm_version_concept_id * missed col value * target_id as int * changed yes/no * Duplicate table Removed duplicate table in treatmentPatternsRdms.csv * conflict documentation fix * added new test cases * updated data model * Update treatmentPatternsRdms.csv * fixed createModuleSpecifications * snakeCase Issue and cohorts tbl logic * Update treatmentPatternsRdms.csv * Update treatmentPatternsRdms.csv * prefix tbl bug --------- Co-authored-by: Admin_SInduku2 <Admin_SInduku2@its.jnj.com>
* Always create the full results data model * Fix documentation * Fix test
* Initial code for saving and loading template definitions * testing changes for saving definitions * debug removed * using lists correctly * Don't store hash names, seems to create an issue * Modified storage of values in list to test odd behaviour * fixed whitespace changes * CG branch updated to develop line * CG 1.0.0 * incrementalFolder parameter removed
* Initial draft of updates to support CM v6 * Issue 275 balance meta analysis (#278) * Updating evidence synthesis results schema fro balance diagnostic and target_comparator_id * Balance meta-analysis and switching to target_comnparator_id * Fixing balance meta-analysis * Formally importing pnorm from stats to avoid R check note --------- Co-authored-by: Admin_mschuemi <Admin_mschuemi@its.jnj.com> * Add logging to results data model creation and upload * Adding tryCatch around metafor::rma. Including changes from PR 282 * Fix balance synthesis when no analysis is unblinded * Implementing prediction intervals in evidence synthesis (#284) * Fixed error when calibrating prediction intervals when there is no data * Minor fix to prediction interval calibration * Adding missing join variable to ES * Setting required EvidenceSynthesis version to 1.1.0 * Handling some more edge cases in ES * Updating ES unit test --------- Co-authored-by: Martijn Schuemie <schuemie@ohdsi.org> Co-authored-by: Admin_mschuemi <Admin_mschuemi@its.jnj.com>
* updating strategus module for characterization v3.0 - added new settings (targetBaseline, riskFactor, caseSeries) - added new filters (minSMD, minCovariateCount) - added mode input - added new output table name - updated Description to specify char >= 3.0 * Update branch references in DESCRIPTION * Temporarily require lower version of Char for testing * Update cdmModulesAnalysisSpecifications.json updating char test spec * Update cdmModulesAnalysisSpecifications.json * Update cdmModulesAnalysisSpecifications.json - changing char example TAR to get results for risk factor and case series * Require Char v3, update script to generate testdata --------- Co-authored-by: jreps <jreps@its.jnj.com>
* Run styler * Update copyright year * Update NEWS and documentation * Regenerate manuals * Run pkgdown::check * Update results data model
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #290 +/- ##
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- Coverage 97.82% 97.09% -0.74%
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Files 16 16
Lines 4193 5683 +1490
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+ Hits 4102 5518 +1416
- Misses 91 165 +74 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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