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casting source_value #806

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f99fa9c
bump roxygen version
wibeasley Apr 18, 2026
4a97927
`union all` for efficiency
wibeasley Apr 18, 2026
88ebb92
case to avoid casting error
wibeasley Apr 18, 2026
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ Suggests:
VignetteBuilder: knitr
License: Apache License
Roxygen: list()
RoxygenNote: 7.2.3
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://ohdsi.github.io/Achilles/, https://github.com/OHDSI/Achilles
BugReports: https://github.com/OHDSI/Achilles/issues
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141 changes: 71 additions & 70 deletions inst/sql/sql_server/analyses/1900.sql
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Expand Up @@ -4,95 +4,96 @@
select 1900 as analysis_id,
cast(table_name as varchar(255)) as stratum_1,
cast(column_name as varchar(255)) as stratum_2,
source_value as stratum_3,
cast(source_value as varchar(255)) as stratum_3,
cast(null as varchar(255)) as stratum_4,
cast(null as varchar(255)) as stratum_5,
cnt as count_value
into @scratchDatabaseSchema@schemaDelim@tempAchillesPrefix_1900
from (
select 'measurement' as table_name, 'measurement_source_value' as column_name, measurement_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.measurement where measurement_concept_id = 0 group by measurement_source_value
union
select 'measurement' as table_name, 'unit_source_value' as column_name, unit_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.measurement where unit_concept_id = 0 group by unit_source_value
union
select 'procedure_occurrence' as table_name,'procedure_source_value' as column_name, procedure_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.procedure_occurrence where procedure_concept_id = 0 group by procedure_source_value
union
select 'procedure_occurrence' as table_name,'modifier_source_value' as column_name, modifier_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.procedure_occurrence where modifier_concept_id = 0 group by modifier_source_value
union
select 'drug_exposure' as table_name, 'drug_source_value' as column_name, drug_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.drug_exposure where drug_concept_id = 0 group by drug_source_value
union
select 'drug_exposure' as table_name, 'route_source_value' as column_name, route_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.drug_exposure where route_concept_id = 0 group by route_source_value
union
select 'condition_occurrence' as table_name, 'condition_source_value' as column_name, condition_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.condition_occurrence where condition_concept_id = 0 group by condition_source_value
union
select 'condition_occurrence' as table_name, 'condition_status_source_value' as column_name, condition_status_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.condition_occurrence where condition_status_concept_id = 0 group by condition_status_source_value
union
select 'observation' as table_name, 'observation_source_value' as column_name, observation_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.observation where observation_concept_id = 0 group by observation_source_value
union
select 'observation' as table_name, 'unit_source_value' as column_name, unit_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.observation where unit_concept_id = 0 group by unit_source_value
union
select 'observation' as table_name, 'qualifier_source_value' as column_name, qualifier_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.observation where qualifier_concept_id = 0 group by qualifier_source_value
union
select 'payer_plan_period' as table_name, 'payer_source_value' as column_name, payer_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where payer_concept_id = 0 group by payer_source_value
union
select 'payer_plan_period' as table_name, 'plan_source_value' as column_name, plan_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where plan_concept_id = 0 group by plan_source_value
union
select 'payer_plan_period' as table_name, 'sponsor_source_value' as column_name, sponsor_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where sponsor_concept_id = 0 group by sponsor_source_value
union
select 'payer_plan_period' as table_name, 'stop_reason_source_value' as column_name, stop_reason_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where stop_reason_concept_id = 0 group by stop_reason_source_value
union
select 'provider' as table_name, 'specialty_source_value' as column_name, specialty_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.provider where specialty_concept_id = 0 group by specialty_source_value
union
select 'provider' as table_name, 'gender_source_value' as column_name, gender_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.provider where gender_concept_id = 0 group by gender_source_value
union
select 'person' as table_name, 'gender_source_value' as column_name, gender_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.person where gender_concept_id = 0 group by gender_source_value
union
select 'person' as table_name, 'race_source_value' as column_name, race_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.person where race_concept_id = 0 group by race_source_value
union
select 'person' as table_name, 'ethnicity_source_value' as column_name, ethnicity_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.person where ethnicity_concept_id = 0 group by ethnicity_source_value
union
select 'specimen' as table_name, 'specimen_source_value' as column_name, specimen_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where specimen_concept_id = 0 group by specimen_source_value
union
select 'specimen' as table_name, 'unit_source_value' as column_name, unit_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where unit_concept_id = 0 group by unit_source_value
union
select 'specimen' as table_name, 'anatomic_site_source_value' as column_name, anatomic_site_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where anatomic_site_concept_id = 0 group by anatomic_site_source_value
union
select 'specimen' as table_name, 'disease_status_source_value' as column_name, disease_status_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where disease_status_concept_id = 0 group by disease_status_source_value
select 'measurement' as table_name, 'measurement_source_value' as column_name, cast(measurement_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.measurement where measurement_concept_id = 0 group by measurement_source_value
union all
select 'measurement' as table_name, 'unit_source_value' as column_name, cast(unit_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.measurement where unit_concept_id = 0 group by unit_source_value
union all
select 'procedure_occurrence' as table_name,'procedure_source_value' as column_name, cast(procedure_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.procedure_occurrence where procedure_concept_id = 0 group by procedure_source_value
union all
select 'procedure_occurrence' as table_name,'modifier_source_value' as column_name, cast(modifier_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.procedure_occurrence where modifier_concept_id = 0 group by modifier_source_value
union all
select 'drug_exposure' as table_name, 'drug_source_value' as column_name, cast(drug_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.drug_exposure where drug_concept_id = 0 group by drug_source_value
union all
select 'drug_exposure' as table_name, 'route_source_value' as column_name, cast(route_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.drug_exposure where route_concept_id = 0 group by route_source_value
union all
select 'condition_occurrence' as table_name, 'condition_source_value' as column_name, cast(condition_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.condition_occurrence where condition_concept_id = 0 group by condition_source_value
union all
select 'condition_occurrence' as table_name, 'condition_status_source_value' as column_name, cast(condition_status_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.condition_occurrence where condition_status_concept_id = 0 group by condition_status_source_value
union all
select 'observation' as table_name, 'observation_source_value' as column_name, cast(observation_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.observation where observation_concept_id = 0 group by observation_source_value
union all
select 'observation' as table_name, 'unit_source_value' as column_name, cast(unit_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.observation where unit_concept_id = 0 group by unit_source_value
union all
select 'observation' as table_name, 'qualifier_source_value' as column_name, cast(qualifier_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.observation where qualifier_concept_id = 0 group by qualifier_source_value
union all
select 'payer_plan_period' as table_name, 'payer_source_value' as column_name, cast(payer_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where payer_concept_id = 0 group by payer_source_value
union all
select 'payer_plan_period' as table_name, 'plan_source_value' as column_name, cast(plan_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where plan_concept_id = 0 group by plan_source_value
union all
select 'payer_plan_period' as table_name, 'sponsor_source_value' as column_name, cast(sponsor_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where sponsor_concept_id = 0 group by sponsor_source_value
union all
select 'payer_plan_period' as table_name, 'stop_reason_source_value' as column_name, cast(stop_reason_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.payer_plan_period where stop_reason_concept_id = 0 group by stop_reason_source_value
union all
select 'provider' as table_name, 'specialty_source_value' as column_name, cast(specialty_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.provider where specialty_concept_id = 0 group by specialty_source_value
union all
select 'provider' as table_name, 'gender_source_value' as column_name, cast(gender_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.provider where gender_concept_id = 0 group by gender_source_value
union all
select 'person' as table_name, 'gender_source_value' as column_name, cast(gender_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.person where gender_concept_id = 0 group by gender_source_value
union all
select 'person' as table_name, 'race_source_value' as column_name, cast(race_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.person where race_concept_id = 0 group by race_source_value
union all
select 'person' as table_name, 'ethnicity_source_value' as column_name, cast(ethnicity_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.person where ethnicity_concept_id = 0 group by ethnicity_source_value
union all
select 'specimen' as table_name, 'specimen_source_value' as column_name, cast(specimen_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where specimen_concept_id = 0 group by specimen_source_value
union all
select 'specimen' as table_name, 'unit_source_value' as column_name, cast(unit_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where unit_concept_id = 0 group by unit_source_value
union all
select 'specimen' as table_name, 'anatomic_site_source_value' as column_name, cast(anatomic_site_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where anatomic_site_concept_id = 0 group by anatomic_site_source_value
union all
select 'specimen' as table_name, 'disease_status_source_value' as column_name, cast(disease_status_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.specimen where disease_status_concept_id = 0 group by disease_status_source_value
{@cdmVersion in ('5.3', '5.4')}?{
union
select 'visit_detail' as table_name, 'visit_detail_source_value' as column_name, visit_detail_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where visit_detail_concept_id = 0 group by visit_detail_source_value
union
union all
select 'visit_detail' as table_name, 'visit_detail_source_value' as column_name, cast(visit_detail_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where visit_detail_concept_id = 0 group by visit_detail_source_value
union all
{@cdmVersion in ('5.4')} ?
{
select 'visit_detail' as table_name, 'admitted_from_source_value' as column_name, admitted_from_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where admitted_from_concept_id = 0 group by admitted_from_source_value
union
select 'visit_detail' as table_name, 'discharged_to_source_value' as column_name, discharged_to_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where discharged_to_concept_id = 0 group by discharged_to_source_value
select 'visit_detail' as table_name, 'admitted_from_source_value' as column_name, cast(admitted_from_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where admitted_from_concept_id = 0 group by admitted_from_source_value
union all
select 'visit_detail' as table_name, 'discharged_to_source_value' as column_name, cast(discharged_to_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where discharged_to_concept_id = 0 group by discharged_to_source_value
}
:
{
select 'visit_detail' as table_name, 'admitting_source_value' as column_name, admitting_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where admitting_source_concept_id = 0 group by admitting_source_value
union
select 'visit_detail' as table_name, 'discharge_to_source_value' as column_name, discharge_to_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where discharge_to_concept_id = 0 group by discharge_to_source_value
select 'visit_detail' as table_name, 'admitting_source_value' as column_name, cast(admitting_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where admitting_source_concept_id = 0 group by admitting_source_value
union all
select 'visit_detail' as table_name, 'discharge_to_source_value' as column_name, cast(discharge_to_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_detail where discharge_to_concept_id = 0 group by discharge_to_source_value
}
}
union
select 'visit_occurrence' as table_name, 'visit_source_value' as column_name, visit_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where visit_concept_id = 0 group by visit_source_value
union
union all
select 'visit_occurrence' as table_name, 'visit_source_value' as column_name, cast(visit_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where visit_concept_id = 0 group by visit_source_value
union all
{@cdmVersion in ('5.4')} ?
{
select 'visit_occurrence' as table_name, 'admitted_from_source_value' as column_name, admitted_from_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where admitted_from_concept_id = 0 group by admitted_from_source_value
union
select 'visit_occurrence' as table_name, 'discharged_to_source_value' as column_name, discharged_to_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where discharged_to_concept_id = 0 group by discharged_to_source_value
select 'visit_occurrence' as table_name, 'admitted_from_source_value' as column_name, cast(admitted_from_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where admitted_from_concept_id = 0 group by admitted_from_source_value
union all
select 'visit_occurrence' as table_name, 'discharged_to_source_value' as column_name, cast(discharged_to_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where discharged_to_concept_id = 0 group by discharged_to_source_value
}
:
{
select 'visit_occurrence' as table_name, 'admitting_source_value' as column_name, admitting_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where admitting_source_concept_id = 0 group by admitting_source_value
union
select 'visit_occurrence' as table_name, 'discharge_to_source_value' as column_name, discharge_to_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where discharge_to_concept_id = 0 group by discharge_to_source_value
select 'visit_occurrence' as table_name, 'admitting_source_value' as column_name, cast(admitting_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where admitting_source_concept_id = 0 group by admitting_source_value
union all
select 'visit_occurrence' as table_name, 'discharge_to_source_value' as column_name, cast(discharge_to_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.visit_occurrence where discharge_to_concept_id = 0 group by discharge_to_source_value
}
union
select 'device_exposure' as table_name, 'device_source_value' as column_name, device_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.device_exposure where device_concept_id = 0 group by device_source_value
union
select 'death' as table_name, 'cause_source_value' as column_name, cause_source_value as source_value, count_big(*) as cnt from @cdmDatabaseSchema.death where cause_concept_id = 0 group by cause_source_value
union all
select 'device_exposure' as table_name, 'device_source_value' as column_name, cast(device_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.device_exposure where device_concept_id = 0 group by device_source_value
union all
select 'death' as table_name, 'cause_source_value' as column_name, cast(cause_source_value as varchar(255)) as source_value, count_big(*) as cnt from @cdmDatabaseSchema.death where cause_concept_id = 0 group by cause_source_value
) a
where cnt >= 1
;