Update cloud branch

.gitignore

@@ -65,4 +65,4 @@ man/
 npm-debug.log
 inst/doc
 tests/testthat/Rplots.pdf
-trial.omv
+/trial.omv

CITATION.cff

@@ -1,5 +1,5 @@
 cff-version: 1.2.0
-title: "SummaryTables: Publication-Ready Summary Tables for Jamovi"
+title: "SummaryTables: Publication-Ready Summary Tables for jamovi"
 message: >-
   If you use this software, please cite it using the
   metadata from this file.

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: SummaryTables
-Title: Publication-Ready Summary Tables for Jamovi
-Version: 1.3.2
+Title: Publication-Ready Summary Tables for jamovi
+Version: 1.3.3
 Authors@R: 
     person("Nour Edin", "Darwish", , "nouredindarwish@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0009-0009-5527-4539"))
@@ -27,30 +27,22 @@ BugReports: https://github.com/NourEdinDarwish/SummaryTables/issues
 Depends: 
     R (>= 4.1)
 Imports: 
-    broom.helpers (>= 1.22.0),
+    broom.helpers,
     car,
-    cards (>= 0.7.1),
-    cardx (>= 0.3.1),
-    cli,
+    cardx,
     datawizard,
     dplyr,
     effectsize,
     flextable,
     forcats,
     gt,
-    gtsummary (>= 2.5.0.9001),
+    gtsummary,
     jmvcore (>= 0.8.5),
     parameters,
     R6,
     rlang,
     smd,
-    survival,
-    tidyr
-Remotes: 
-    larmarange/broom.helpers@96d2cae,
-    insightsengineering/cards@v0.7.1,
-    insightsengineering/cardx@v0.3.1,
-    ddsjoberg/gtsummary@952b665
+    survival
 Config/roxygen2/version: 8.0.0
 Encoding: UTF-8
 LazyData: true

NEWS.md

@@ -1,3 +1,11 @@
+## SummaryTables 1.3.3
+
+* Added the Trial dataset to jamovi's Data Library.
+* Improved variable selection in Cross Table and Likert Table.
+* Fixed an issue with Confidence Interval (CI) formatting.
+* Improved statistical test labels.
+* General bug-fixes and improvements.
+
 ## SummaryTables 1.3.2
 
 * Added the missing "CI = Confidence Interval" abbreviation source note to Survival Tables.

R/00jmv.R

@@ -4,7 +4,7 @@
 .jmvrefs <- list(
     `SummaryTables`=list(
         `type`="software", 
-        `title`="SummaryTables: Publication-Ready Summary Tables for Jamovi", 
+        `title`="SummaryTables: Publication-Ready Summary Tables for jamovi", 
         `author`="Darwish, N. E.", 
         `year`=2026, 
         `publisher`="https://doi.org/10.5281/zenodo.18902312", 

R/pipeline.R

@@ -363,11 +363,30 @@ pipeAddCi <- function(
 
   # Pattern -----------------------------------------------------------------
   statsWithParens <- c("meanSd", "medianIqr", "medianRange", "nPercent", "eda")
+
+  effectiveContStats <- stats::setNames(
+    rep(options$statContDefault, length(varsCont)),
+    varsCont
+  )
+  for (item in options$statContSpecific) {
+    if (item$stat != "useDefault") {
+      effectiveContStats[[item$var]] <- item$stat
+    }
+  }
+
+  effectiveCatStats <- stats::setNames(
+    rep(options$statCatDefault, length(varsCat)),
+    varsCat
+  )
+  for (item in options$statCatSpecific) {
+    if (item$stat != "useDefault") {
+      effectiveCatStats[[item$var]] <- item$stat
+    }
+  }
+
   selectedStats <- c(
-    options$statContDefault,
-    options$statCatDefault,
-    vapply(options$statContSpecific, \(x) x$stat, character(1)),
-    vapply(options$statCatSpecific, \(x) x$stat, character(1))
+    effectiveContStats,
+    effectiveCatStats
   )
   useSquareBrackets <- any(selectedStats %in% statsWithParens)
 

docs/user-guide.md

@@ -92,7 +92,7 @@ The module automatically selects appropriate statistical tests based on your dat
   ![Screenshot showing the default test dropdown for continuous variables with parametric and non-parametric options](assets/default-test-continuous.png){ loading=lazy width="500" }
 </figure>
 
-* **Parametric (Default):** Uses the independent t-test (not assuming equal variance) for 2 groups, or one-way ANOVA (not assuming equal variance) for >2 groups.
+* **Parametric (Default):** Uses the independent t-test (not assuming equal variances) for 2 groups, or one-way ANOVA (not assuming equal variances) for >2 groups.
 * **Non-parametric:** Uses the Wilcoxon rank-sum test for 2 groups, or Kruskal-Wallis rank-sum test for >2 groups.
 
 !!! info "Grouping Variable in the Continuous Table"

jamovi/0000.yaml

@@ -1,12 +1,12 @@
 ---
 title: Publication-Ready Summary Tables
 name: SummaryTables
-version: 1.3.2
+version: 1.3.3
 jms: '1.0'
 authors:
   - Nour Edin Darwish
 maintainer: Nour Edin Darwish <nouredindarwish@gmail.com>
-date: '2026-05-24'
+date: '2026-07-15'
 type: R
 description: >-
   A comprehensive module for creating publication-ready summary and regression
@@ -155,6 +155,10 @@ analyses:
       table with hazard ratios, confidence intervals, and p-values. Includes
       global p-values, event counts, significance stars, and p-value
       adjustments.
+datasets:
+  - name: Trial
+    path: Trial.omv
+    description: A simulated dataset of 200 patients who received Drug A or Drug B.
 usesNative: true
 minApp: 2.7.12
 

jamovi/00refs.yaml

@@ -1,7 +1,7 @@
 refs:
     SummaryTables:
         type: "software"
-        title: "SummaryTables: Publication-Ready Summary Tables for Jamovi"
+        title: "SummaryTables: Publication-Ready Summary Tables for jamovi"
         author: Darwish, N. E.
         year: 2026
         publisher: "https://doi.org/10.5281/zenodo.18902312"

jamovi/tblcontinuous.a.yaml

@@ -241,11 +241,11 @@ options:
         name: nonparametric
       - title: t-test
         name: t.test
-      - title: t-test (equal variance)
+      - title: t-test (equal variances)
         name: t.test.equalVar
       - title: ANOVA
         name: oneway.test
-      - title: ANOVA (equal variance)
+      - title: ANOVA (equal variances)
         name: oneway.test.equalVar
       - title: Wilcoxon rank-sum
         name: wilcox.test
@@ -268,11 +268,11 @@ options:
               name: useDefault
             - title: t-test
               name: t.test
-            - title: t-test (equal variance)
+            - title: t-test (equal variances)
               name: t.test.equalVar
             - title: ANOVA
               name: oneway.test
-            - title: ANOVA (equal variance)
+            - title: ANOVA (equal variances)
               name: oneway.test.equalVar
             - title: Wilcoxon rank-sum
               name: wilcox.test

jamovi/tblcross.u.yaml

@@ -7,6 +7,8 @@ children:
   - type: VariableSupplier
     persistentItems: false
     stretchFactor: 1
+    permitted:
+      - factor
     children:
       - type: TargetLayoutBox
         children:

jamovi/tbllikert.u.yaml

@@ -7,6 +7,8 @@ children:
   - type: VariableSupplier
     persistentItems: false
     stretchFactor: 1
+    permitted:
+      - factor
     children:
       - type: TargetLayoutBox
         children:

jamovi/tblsummary.a.yaml

@@ -404,7 +404,7 @@ options:
     options:
       - title: t-test
         name: t.test
-      - title: t-test (equal variance)
+      - title: t-test (equal variances)
         name: t.test.equalVar
       - title: Wilcoxon rank-sum
         name: wilcox.test
@@ -431,7 +431,7 @@ options:
               name: useDefault
             - title: t-test
               name: t.test
-            - title: t-test (equal variance)
+            - title: t-test (equal variances)
               name: t.test.equalVar
             - title: Wilcoxon rank-sum
               name: wilcox.test
@@ -584,11 +584,11 @@ options:
         name: nonparametric
       - title: t-test
         name: t.test
-      - title: t-test (equal variance)
+      - title: t-test (equal variances)
         name: t.test.equalVar
       - title: ANOVA
         name: oneway.test
-      - title: ANOVA (equal variance)
+      - title: ANOVA (equal variances)
         name: oneway.test.equalVar
       - title: Wilcoxon rank-sum
         name: wilcox.test
@@ -611,11 +611,11 @@ options:
               name: useDefault
             - title: t-test
               name: t.test
-            - title: t-test (equal variance)
+            - title: t-test (equal variances)
               name: t.test.equalVar
             - title: ANOVA
               name: oneway.test
-            - title: ANOVA (equal variance)
+            - title: ANOVA (equal variances)
               name: oneway.test.equalVar
             - title: Wilcoxon rank-sum
               name: wilcox.test