GitHub - NicholasDominic/Stochastic-VIF-ID-Rice-SNPs: By leveraging ensemble learning, this program can be used to analyze the Linkage Disequilibrium between SNPs in each Indonesian rice chromosomes. Developed using Python 3.9.12.

Name		Name	Last commit message	Last commit date
results		results
suppl_materials		suppl_materials
main.py		main.py
pre-analysis.ipynb		pre-analysis.ipynb
requirements.txt		requirements.txt
snp_info.py		snp_info.py
svif-results.ipynb		svif-results.ipynb

About

By leveraging ensemble learning, this program can be used to analyze the Linkage Disequilibrium between SNPs in each Indonesian rice chromosomes. Developed using Python 3.9.12.

bootstraping ensemble-learning genomics linkage-disequilibrium machine-learning-algorithms multicollinearity python-3 single-nucleotide-polymorphisms stochastic-processes variance-inflation-factor

Activity

0 stars

1 watching

0 forks

Report repository