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#914 update fre-cli container files - #915

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singhd789 wants to merge 6 commits into
NOAA-GFDL:mainfrom
singhd789:914.update-container
Open

#914 update fre-cli container files#915
singhd789 wants to merge 6 commits into
NOAA-GFDL:mainfrom
singhd789:914.update-container

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@singhd789

@singhd789 singhd789 commented Jun 23, 2026

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Describe your changes

  • updates Dockerfile
    • to pull from an ubuntu base image (not condaforge)
    • installs micromamba and other packages needed for pp workflow
    • adds created conda envrionment to the path so that it is automatically loaded upon running the container
  • updated cylc-flow-tools environment.yaml:
    • includes hsm 1.4.0, fre-nctools, and pip
  • updates container readme and runscript

Issue ticket number and link (if applicable)

Fixes #914

Checklist before requesting a review

  • I ran my code
  • I tried to make my code readable
  • I tried to comment my code
  • I wrote a new test, if applicable
  • I wrote new instructions/documentation, if applicable
  • I ran pytest and inspected it's output
  • I ran pylint and attempted to implement some of it's feedback
  • No print statements; all user-facing info uses logging module

Note: If you are a code maintainer updating the tag or releasing a new fre-cli version, please use the release_procedure.md template. To quickly use this template, open a new pull request, choose your branch, and add ?template=release_procedure.md to the end of the url.

@codecov

codecov Bot commented Jun 23, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 82.09%. Comparing base (ad94447) to head (9c7b018).
⚠️ Report is 15 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #915   +/-   ##
=======================================
  Coverage   82.09%   82.09%           
=======================================
  Files          67       67           
  Lines        3736     3736           
=======================================
  Hits         3067     3067           
  Misses        669      669           
Flag Coverage Δ
unittests 82.09% <ø> (ø)

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see 7 files with indirect coverage changes


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@singhd789
singhd789 marked this pull request as ready for review July 17, 2026 13:07
@singhd789
singhd789 requested review from Ciheim and ceblanton and removed request for ceblanton July 17, 2026 13:14
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Update fre-cli container build

2 participants