Repro_PMID_29157215-

Reproduing Integration of RNA-Seq data with heterogeneous microarray data for breast cancer profiling

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
ControlvsCancer_deseq2_results.csv		ControlvsCancer_deseq2_results.csv
GSE_SRR_converter.pl		GSE_SRR_converter.pl
GSM2SRR_RNA_Seq_table.txt		GSM2SRR_RNA_Seq_table.txt
GSM_combined.counts.zip		GSM_combined.counts.zip
LICENSE		LICENSE
NLM-workshop_2018__Castillo_et_al__Ignacio_Rojas_-_Integration_of_RNA-Seq_data_with_heterogeneous_microarray_data_for_breast_cancer_profiling.pdf		NLM-workshop_2018__Castillo_et_al__Ignacio_Rojas_-_Integration_of_RNA-Seq_data_with_heterogeneous_microarray_data_for_breast_cancer_profiling.pdf
PCA.pdf		PCA.pdf
README.md		README.md
bam_name_changes.txt		bam_name_changes.txt
bam_samtools_merge.txt		bam_samtools_merge.txt
compilation_of_bash_r_deseq2_scripts__reproducibility.txt		compilation_of_bash_r_deseq2_scripts__reproducibility.txt
data_table.md		data_table.md
featurecounts_multi_qsub.sh		featurecounts_multi_qsub.sh
filtered_list_of_array_samples.txt		filtered_list_of_array_samples.txt
hisat2_qsub.sh		hisat2_qsub.sh
repro_presentation.pptx		repro_presentation.pptx
summary_control_cancer.docx		summary_control_cancer.docx
variance_stabilized_data.csv		variance_stabilized_data.csv
volcano.pdf		volcano.pdf

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