Add tests

.github/workflows/release.yml

@@ -0,0 +1,25 @@
+name: Create GitHub Release
+
+on:
+  push:
+    tags:
+      - "v*.*.*"
+
+permissions:
+  contents: write
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@v2
+        with:
+          generate_release_notes: true
+          tag_name: ${{ github.ref_name }}
+          name: Release ${{ github.ref_name }}

polyase/__init__.py

@@ -6,7 +6,7 @@
 of allelic imbalance in polyploid plant genomes.
 """
 
-__version__ = "1.3.2"
+__version__ = "1.3.3"
 __author__ = "Nadja Nolte"
 
 from .allele_utils import AlleleRatioCalculator, calculate_allelic_ratios

polyase/allele_utils.py

@@ -154,7 +154,7 @@ def get_ratios_for_synt_id(self, synt_id, ratio_layer='allelic_ratio_unique_coun
             raise ValueError(f"Ratio layer '{ratio_layer}' not found. Calculate ratios first.")
 
         mask = self.adata.var['Synt_id'] == synt_id
-        return self.adata.layers[ratio_layer][mask]
+        return self.adata.layers[ratio_layer][:, mask]
 
 
 def calculate_allelic_ratios(adata, counts_layer='unique_counts'):

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "polyase"
-version = "1.3.2"
+version = "1.3.3"
 description = "A package for analyzing allele-specific expression in polyploid organisms"
 authors = [
     {name = "nadja.franziska.nolte@nib.si"}