nascent-lulcc

Land Use/Land Cover Change (LULCC) modelling project for nascent transitions.

Directory Structure

• src/: All R source functions (flat structure)
• scripts/: Executable scripts (R pipelines, shell scripts, Python scripts)
• config/: Configuration files (YAML, model specs)
• environments/: Conda environment definitions
• dinamica/: Dinamica EGO model files
• docs/: Documentation

HPC Setup

1. Upload this directory to /cluster/home/bblack/nascent-lulcc
2. Copy .env.template to .env and customize paths
3. Source the environment: source .env
4. Create scratch directories on HPC scratch filesystem
5. Set up conda environments from environments/ directory

Environment Variables

The .env file defines all necessary paths:

• Project code in /cluster/home/bblack/nascent-lulcc
• Data and results on scratch filesystem /cluster/scratch/bblack/nascent-lulcc

Usage

Source the environment configuration in your job scripts:

source /cluster/home/bblack/nascent-lulcc/.env

Then run scripts from the scripts/ directory with proper paths set.