Examples in BLUPF90 family of software

This contribution was initiated by Y. Masuda, and finalized by E. Carrara and F. de Oliveira Bussiman

• Please note this repository contains only parameter and data files needed to execute the example. To download, install, and run the BLUPF90 family of software please visit https://nce.ads.uga.edu/software/

• *.par is for parameter files, *.dat for data, *.ped for pedigree, *.gen for genotypes, and *.xrf for Xref_ID files. For user_file-type matrices, the files are named as mrEXAMPLENUMBER.MATRIXNAME

• Chapter 4

  • Best Linear Unbiased Prediction of Breeding Value: Univariate Models with One Random Effect

• Chapter 5

  • Best Linear Unbiased Prediction of Breeding Value: Models with Random Environmental Effects

• Chapter 6

  • Best Linear Unbiased Prediction of Breeding Value: Multivariate Models

• Chapter 7

  • Methods to Reduce the Dimension of Multivariate Models

• Chapter 8

  • Maternal Trait Models: Animal and Reduced Animal Models

• Chapter 9

  • Social Interaction Models

• Chapter 10

  • Analysis of Longitudinal Data

• Chapter 11

  • Genomic Prediction and Selection

• Chapter 12

  • Single-step Approaches to Genomics

• Chapter 13

  • Non-additive Animal Models

• Chapter 14

  • Genetic and Genomic Models for Multibreed and Crossbred Analyses

• Chapter 15

  • Analysis of Ordered Categorical Traits