Immunometabolism group focused on the study of aging, autoimmunity and cancer University of Chicago
Anton Zhelonkin, MD
Computational biology postdoc with Ben May Cancer Department, The Ben May Cancer Research Department, UChicago
antonz@uchicago.edu
Denis Mogilenko, PhD
Assistant Professor, Ben May Department for Cancer Research, University of Chicago
mogilenko@uchicago.edu
Bulk RNAseq analysis for KayLee`s MECR-KO in vivo experiment
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Forked from tony-zhelonkin/RNAseq_pipelineDock
Fork of the Docker pipeline for bulk RNAseq data processing, at the state it was used for KayLee Steiner`s, Jeff Rathmell`s 'Mitochondrial Fatty Acid Synthesis and Mecr Regulate CD4+ T Cell Functio…
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Bulk RNAseq analysis for Clara Si`s experiment on the time-dependant effect of RANKL in macrophage Salmonella infection
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Transcriptomic Analysis of Regulatory T Cell Transferrin Gene Knockout Effects in Mouse Spleen and Lung Tissues
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Forked from CUHIMSR/CytofBatchAdjust
Fork of the legacy code for batch adjustment in CyTOF data
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Sorted JIA synovial fluid/blood Tregs (GSE160097) + effector Treg signature (GSE161426) — STING-JR's Treg-relevant compartment
Analysis of STING-cGAS GSE329522 data related to 'cGAS/STING Activation is Potentiated by Hyperthermia` by Sinard RC, Wilson JT, Rathmell JC, Ye X, Jones A
Bulk RNAseq analysis for the manuscript 'Baum, T.B., Costanzo, J., Bodnya, C. et al. DRP1 mutations associated with EMPF1 encephalopathy perturb the transcriptional profile and maturation of cortical neurons. J Neurodevelop Disord (2026). https://doi.org/10.1186/s11689-026-09713-0'
Interactive trajectory dashboard companion to Baum et al. 2025 (DRP1 bulk RNA-seq). Live at https://drp1.omicable.com
Bulk RNAseq analysis for Clara Si`s experiment on the time-dependant effect of RANKL in macrophage Salmonella infection
Transcriptomic Analysis of Regulatory T Cell Transferrin Gene Knockout Effects in Mouse Spleen and Lung Tissues
Fork of the legacy code for batch adjustment in CyTOF data
Fork of the Docker pipeline for bulk RNAseq data processing, at the state it was used for KayLee Steiner`s, Jeff Rathmell`s 'Mitochondrial Fatty Acid Synthesis and Mecr Regulate CD4+ T Cell Function and Oxidative Metabolism' paper
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