Add post-pipeline analysis API and enhance SeqNadoProject for multiomics#410
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alsmith151 wants to merge 6 commits into
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Add post-pipeline analysis API and enhance SeqNadoProject for multiomics#410alsmith151 wants to merge 6 commits into
alsmith151 wants to merge 6 commits into
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- Updated fake_project fixture to create sample BED files with content instead of empty files. - Added unit tests for enum methods related to bigWigs and peaks. - Implemented tests for various discovery helpers including pileup methods, scales, and peak methods. - Created tests for loading peaks, alignment stats, and benchmarks with fake data. - Added tests for filtering projects based on conditions and antibodies. - Enhanced summary tests to check for detailed output and presence of files.
…iProject for multiomics support
…fig discovery and new properties for samples, conditions, antibodies, and groups
…updates and setter method
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This pull request introduces the new Python Analysis API to the project, making it accessible both in the codebase and in the documentation. The main changes include exposing the analysis API's main classes and functions at the top level and updating the documentation to reflect the new API.
API exposure and import changes:
SeqNadoProject,SeqNadoMultiProject, andopen_projectfrom theanalysismodule at the package level inseqnado/__init__.py, making them accessible to users as top-level imports. [1] [2]analysismodule to the package-level imports inseqnado/__init__.py. [1] [2]__all__declaration inseqnado/analysis/__init__.pyto specify the public API of the analysis module.Documentation updates:
docs/SUMMARY.md, making it discoverable for users.