feat: enhance CLI reactivity and improve module imports for performance

[alsmith151]

This pull request refactors the handling of the GenomicCoordinate class within the seqnado package, moving its definition from core.py to config/configs.py and updating all imports accordingly. Additionally, it introduces lazy loading for certain submodules and attributes in seqnado/__init__.py to improve CLI startup performance, and makes minor import optimizations in CLI modules.

Refactoring and module organization:

• Moved the GenomicCoordinate class definition from seqnado/core.py to seqnado/config/configs.py, and updated all imports throughout the codebase to reference it from seqnado.config instead of seqnado.core. ([[1]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-d3b7ccc9f593a1e25acd15c69e38b11e4e4d4a67ce3ad43fe77a1486603e5962L18), [[2]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-d3b7ccc9f593a1e25acd15c69e38b11e4e4d4a67ce3ad43fe77a1486603e5962R34-R59), [[3]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-9b511b2c2ea157e741acb3db2ee8f586e800f3c9903dd18ce32c9805c28f1a05L213-L241), [[4]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-11a6e1e516ef60c7da196706db5b6e06c604f9d9247756483fa744eb461bbf81R30), [[5]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-11a6e1e516ef60c7da196706db5b6e06c604f9d9247756483fa744eb461bbf81R79), [[6]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-883a25dedb28cc2b9ac096fb965ecec2a9e94c39595c342921d1f12ae0288489R6-L8), [[7]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-a7827246b2939098782be886067e452593f2d60ce11f68963b5c30283bc7de16L20-R40), [[8]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-a7827246b2939098782be886067e452593f2d60ce11f68963b5c30283bc7de16L52-R67))

Performance and import optimizations:

• Introduced lazy loading for the data, config, inputs, and outputs submodules, as well as the GenomicCoordinate attribute, in seqnado/__init__.py to reduce initial import time and improve CLI responsiveness. ([seqnado/__init__.pyL20-R40](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-a7827246b2939098782be886067e452593f2d60ce11f68963b5c30283bc7de16L20-R40))
• Changed the import in seqnado/cli/autocomplete.py to reference Assay from seqnado.core instead of seqnado.inputs for faster CLI startup. ([seqnado/cli/autocomplete.pyL11-R11](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-dac371c1a164c6b26d1fea4040819c7c8e04ec9b836d40f63fde0b97c4ead432L11-R11))

CLI code improvements:

• Moved certain imports in CLI modules (benchmark.py, pipeline.py) inside functions to avoid unnecessary imports at startup, further improving CLI performance. ([[1]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-f16a7f7683f09a511b4c66927ee96e103e34cc5b16e11c1fc2d0dad50991a85dL11-L20), [[2]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-f16a7f7683f09a511b4c66927ee96e103e34cc5b16e11c1fc2d0dad50991a85dR94-R103), [[3]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-676fb2c9491e8c429914d857bd37bf37e082a262f4c50fa0e4e6fc192a0bf718L16), [[4]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-676fb2c9491e8c429914d857bd37bf37e082a262f4c50fa0e4e6fc192a0bf718L29), [[5]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-676fb2c9491e8c429914d857bd37bf37e082a262f4c50fa0e4e6fc192a0bf718R45), [[6]](https://github.com/Milne-Group/SeqNado/pull/409/files#diff-676fb2c9491e8c429914d857bd37bf37e082a262f4c50fa0e4e6fc192a0bf718R248))