Name		Name	Last commit message	Last commit date
analysis		analysis
.codex		.codex
.gitignore		.gitignore
1_QC_Pipeline.sh		1_QC_Pipeline.sh
2_Clustering.sh		2_Clustering.sh
2_master.sh		2_master.sh
3_Annotation.sh		3_Annotation.sh
4_Expr_filtering.sh		4_Expr_filtering.sh
5_InferCNA.sh		5_InferCNA.sh
5_master.sh		5_master.sh
6_Malignancy.sh		6_Malignancy.sh
6_master.sh		6_master.sh
8_geneNMF.sh		8_geneNMF.sh
AGENTS.md		AGENTS.md
Annotation.R		Annotation.R
Clustering.R		Clustering.R
Expr_filtering.R		Expr_filtering.R
InferCNA.R		InferCNA.R
LICENSE		LICENSE
Malignancy.R		Malignancy.R
QC_Pipeline.R		QC_Pipeline.R
README.md		README.md
cell_states_master.sh		cell_states_master.sh

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snSeq_Pipeline

QC and analysis pipeline for OAC single nucleus RNA-seq datasets

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QC and analysis pipeline for OAC single nucleus RNA-seq datasets

BSD-3-Clause license

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