Fix alive module - #102
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7 errors, 11 warnings, and 1 notice
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Post Run neurogenomics/rworkflows@master
Error: connect ECONNREFUSED 127.0.0.1:7777
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] Error
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] Unable to report stat collector result
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Post Run neurogenomics/rworkflows@master
Error: connect ECONNREFUSED 127.0.0.1:7777
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] Error
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] Unable to finish stat collector
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Run neurogenomics/rworkflows@master
The deploy step encountered an error: The process '/usr/bin/git' failed with exit code 128 ❌
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Complete job
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L85
[lintr] Variable and function name style should match snake_case or symbols.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L80
[lintr] Use the |> pipe operator instead of the %>% pipe operator.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L76
[lintr] Use the |> pipe operator instead of the %>% pipe operator.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L75
[lintr] Use the |> pipe operator instead of the %>% pipe operator.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L71
[lintr] Put a space between a right parenthesis and a body expression.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L71
[lintr] There should be a space before an opening curly brace.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L53
[lintr] local variable 'assay_name' assigned but may not be used
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L52
[lintr] Variable and function name style should match snake_case or symbols.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L42
[lintr] Could not find exported symbols for package "scran" in libraries '/__w/_temp/Library', '/usr/local/lib/R/site-library', '/usr/local/lib/R/library' (there is no package called 'scran'). This may lead to false positives.
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Run neurogenomics/rworkflows@master:
inst/rmd/Doublet_identification_new.qmd#L42
[lintr] Could not find exported symbols for package "scran" in libraries '/__w/_temp/Library', '/usr/local/lib/R/site-library', '/usr/local/lib/R/library' (there is no package called 'scran'). This may lead to false positives.
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Run neurogenomics/rworkflows@master
Deployment failed! ❌
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