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Clean Up #2

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23 changes: 0 additions & 23 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -72,26 +72,3 @@ Here are some ways to add specific behaviors for notebook containers. Note these
cd ..
docker compose up
```



Current status:
Notebook not fully function, error running last cell of preparing-input-data.ipynb because it is trying to write to the read-only input data dir:

PermissionError Traceback (most recent call last)
Cell In[8], line 2
1 # create and read in the metadata table
----> 2 stitches.make_pangeo_table()
3 final_pangeo = archive = pd.read_csv(
4 resources.files("stitches") / "data" / "pangeo_table.csv"
5 )
7 print(final_pangeo.head())

File /opt/conda/lib/python3.11/site-packages/stitches/make_pangeo_table.py:62, in make_pangeo_table()
60 # Write the file out
61 out_file = resources.files("stitches") / "data" / "pangeo_table.csv"
---> 62 final_pangeo_table.to_csv(out_file, index=False)

...

PermissionError: [Errno 13] Permission denied: '/opt/conda/lib/python3.11/site-packages/stitches/data/pangeo_table.csv'
4,918 changes: 0 additions & 4,918 deletions notebooks/stitches_takehome_GCAMAnnualMeeting2023.ipynb
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2,737 changes: 0 additions & 2,737 deletions notebooks/stitches_training_GCAMAnnualMeeting2023.ipynb
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