Update singularity image locations for sumner2 #87
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@@ -192,16 +192,16 @@ process { | |
| * Runtime options | ||
| */ | ||
| withLabel: "tracking" { | ||
| container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/runtime/v0.1.2/latest.sif" | ||
| } | ||
| withLabel: "jabs_classify" { | ||
| container = "/projects/kumar-lab/meta/images/JABS-behavior-classifier/headless/v0.36.1/latest.sif" | ||
| } | ||
| withLabel: "jabs_postprocess" { | ||
| container = "/projects/kumar-lab/meta/images/JABS-postprocess/jabs-postprocess/v0.3.1/latest.sif" | ||
| } | ||
| withLabel: "jabs_table_convert" { | ||
| container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/RBase/v0.1.2/latest.sif" | ||
| } | ||
| withLabel: "gait" { | ||
| container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/gait-pipeline-2025-03-27.sif" | ||
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@@ -210,10 +210,10 @@ process { | |
| container = "/projects/kumar-lab/multimouse-pipeline/nextflow-containers/vfi-2025-03-27.sif" | ||
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Contributor
There was a problem hiding this comment. VFI paper version was v1. |
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| } | ||
| withLabel: "sleap" { | ||
| container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-1.4.1/v0.1.2/latest.sif" | ||
| } | ||
| withLabel: "sleap_io" { | ||
| container = "/projects/kumar-lab/meta/images/mouse-tracking-runtime/sleap-io-0.2.0/v0.1.2/latest.sif" | ||
| } | ||
| withLabel: "rclone" { | ||
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Contributor
There was a problem hiding this comment. rclone container is a trivial container definition. I only add bash to the container so that nextflow logging can run. The version it's running happens to be rclone v1.70.3 (according to the tool itself).
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Author
There was a problem hiding this comment. That would be great.
Contributor
There was a problem hiding this comment. Added |
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| // executor.queueSize = 1 | ||
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| @@ -0,0 +1,6 @@ | ||
| from: rclone/rclone | ||
| bootstrap: docker | ||
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| %post | ||
| apk add --no-cache bash | ||
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Gait is a difficult one to version right now. It has unrelated histories between private (bitbucket) and public (github, cited paper version). I think the differences are just in Gautam's analysis and vms.
It looks like the paper version is v1.0.0.
The runtime currently there should probably be v1.1.0.