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Casting a potential string object to file to access baseName #84

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Merged
SkepticRaven merged 1 commit into from
Sep 22, 2025
Merged

Casting a potential string object to file to access baseName #84

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2 changes: 1 addition & 1 deletion nextflow/workflows/single_mouse_pipeline.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,7 @@ workflow SPLIT_BY_CORNERS {

// Publish the pose files
v6_poses_renamed = v6_with_corners.map { video, pose ->
tuple(pose, "results/${video.baseName.replace("%20", "/")}_pose_est_v6.h5")
tuple(pose, "results/${file(video).baseName.replace("%20", "/")}_pose_est_v6.h5")
}
PUBLISH_SM_POSE_V6(v6_poses_renamed)
// Corners that failed are placed in a separate folder with url-ified names
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