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Publishing compressed video data into the output folder #80

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Merged
SkepticRaven merged 1 commit into from
Sep 17, 2025
Merged

Publishing compressed video data into the output folder #80

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4 changes: 3 additions & 1 deletion nextflow/workflows/multi_mouse_pipeline.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ include { PREDICT_ARENA_CORNERS;
} from "${projectDir}/nextflow/modules/static_objects"
include { VIDEO_TO_POSE;
PUBLISH_RESULT_FILE as PUBLISH_MM_POSE_V6;
PUBLISH_RESULT_FILE as PUBLISH_COMPRESSED_VIDEO;
} from "${projectDir}/nextflow/modules/utils"
include { COMPRESS_VIDEO_CRF } from "${projectDir}/nextflow/modules/compression"

Expand Down Expand Up @@ -37,8 +38,9 @@ workflow MULTI_MOUSE_TRACKING {
// Compress the original video
compressed_videos = COMPRESS_VIDEO_CRF(input_video.combine([23]).combine([3000]))
compressed_renamed = compressed_videos.map { video ->
tuple(video, "results/${video.baseName.replace("_g3000_crf23", "")}_compressed.mp4")
tuple(video, "results/${video.baseName.replace("_g3000_crf23", "").replace("%20", "/")}_compressed.mp4")
}
PUBLISH_COMPRESSED_VIDEO(compressed_renamed)

emit:
pose_v6
Expand Down